NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0137358_10019629

Scaffold Ga0137358_10019629


Overview

Basic Information
Taxon OID3300012582 Open in IMG/M
Scaffold IDGa0137358_10019629 Open in IMG/M
Source Dataset NameVadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_20_16 metaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4338
Total Scaffold Genes8 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)7 (87.50%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil → Vadose Zone Soil And Rhizosphere Microbial Communities From The Eel River Critical Zone Observatory, Northern California To Study Diel Carbon Cycling

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)39.7291Long. (o)-123.6419Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F007493Metagenome / Metatranscriptome350Y
F026411Metagenome / Metatranscriptome198Y
F027294Metagenome / Metatranscriptome195Y
F080432Metagenome115Y

Sequences

Protein IDFamilyRBSSequence
Ga0137358_100196292F026411AGGMKGQGQKKKFGLEGASGTECRAEFIFYARNQTSKLRSVEVLGDYACDFRRPDWAHRWTDLNFGQNPYLNLFLCAKHARDLGLM*
Ga0137358_100196293F027294GAGMSWTFRAEEHEGLSQMPQQGEVPNMSVFSGFAILITAVLVSVGIFVLCDSTARRSAEISDSVLAGAVLFSLALTLLYFLPRPALT*
Ga0137358_100196294F080432AGGAGGVDIRKGQRWRCQNPKCRSEIFVSTSSRVQGRFNLRCSCGEIMKKPYVRPGLNTFESAKEQHRNLEASPS*
Ga0137358_100196297F007493AGGTGGVIGTSSALIGAVVLLVLILVWIRADSTSRHPPSVLDGWLPDQGDAVEVCPPEFVTQIFSGQDLAFISGLKSPVLKRHFLRERNAVALLWVQQTTAAIRRIMRRHLEASRLSEDIEFAMEARIFLQYAQLRLICGVLSLLIGLAGPPRLHGMALRADKLTQRIGEVLREFESGARTGEMDGARSS*
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