NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0157203_1000131

Scaffold Ga0157203_1000131


Overview

Basic Information
Taxon OID3300012663 Open in IMG/M
Scaffold IDGa0157203_1000131 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Indian River, Ontario, Canada - S50
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterMolecular Research LP (MR DNA)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)26834
Total Scaffold Genes67 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)12 (17.91%)
Novel Protein Genes14 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (21.43%)
Associated Families14

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lotic → Unclassified → Freshwater → Freshwater Microbial Communities From Rivers And Streams Along An Organic Matter Gradient Associated With Agriculture In Ontario, Canada

Source Dataset Sampling Location
Location NameWarsaw, Ontario
CoordinatesLat. (o)44.42735Long. (o)-78.1359Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000716Metagenome / Metatranscriptome923Y
F006840Metagenome / Metatranscriptome363Y
F025233Metagenome / Metatranscriptome202Y
F032245Metagenome / Metatranscriptome180Y
F044374Metagenome / Metatranscriptome154Y
F048842Metagenome / Metatranscriptome147Y
F049561Metagenome / Metatranscriptome146N
F053077Metagenome / Metatranscriptome141Y
F054451Metagenome / Metatranscriptome140Y
F077197Metagenome / Metatranscriptome117N
F078606Metagenome / Metatranscriptome116Y
F082372Metagenome / Metatranscriptome113Y
F096905Metagenome / Metatranscriptome104N
F098924Metagenome / Metatranscriptome103N

Sequences

Protein IDFamilyRBSSequence
Ga0157203_100013110F077197AGAAGGMFLPIEFTDEHGPYIEHLNVTHITRISFVNPRNPDAGSKIHLRTGEILKTTMAFDLLSQAIDEAWESASTLILSTVLSEKAKLMKKSDLQNEGIEELDPLTEA*
Ga0157203_10001312F044374N/AMSRKEKEKEFFAHHMDKFRKAQVTDPFFAIKTAFFQKGKYGRQVQLFEGELKRGEDIYIEFIDIKRDALGKETGIEHAFEDRPLFKYKHNPYFAEEYDVKEGTSSNGDNYFAYTIPLSELMVIMPDGSEITHNLYEKRKAEAPKEQVSLSVFPDFENEFIPKLKEVSLDVEESASDILLRIATEFQKLATKIK*
Ga0157203_100013120F082372N/AMSELETGWISALIKCDLCGHESLSVHHVSSNKLECVNCGRMSHYEIVENYTEEA*
Ga0157203_100013121F054451N/AMKTITKSVIKLSEIPEHLQQDPVLQGHKIHTYAEFHIDGIEQDQLTLWLLSQYPTLNRKISFLIHIDK*
Ga0157203_100013132F048842N/AMKNKAGVVLITLLPILLGAAALFGEIRCIYKMCTCNWEPIGKAEIVYTVGTFTGVGIIIGYLNIEDK*
Ga0157203_10001314F078606N/AMIKTKLFFIALTGSFCSWILIDKLLVEMSIIQFIAIEFIVGLSHFIYNDVKRKLTT*
Ga0157203_100013143F000716N/AMIKPMYIMEKLKEQVRNYQLYAGKTYVQYEQDGFTAYQNYLYKRALYGLDALTEKELATMCSKKKQRIINVYKRAQVTLNKFKQQVTIQYSNAIFNTFFPNSPITQFLLADTETDEKFKNTLTFKDLGIEKQDIIAIFIAEGILPKNFLDLKDAPLALPRLKYEVKA*
Ga0157203_100013145F053077N/AMLYQLPNGKVIHITIEQYLELNPEDIQYLMSIDFGEHILNPFADSAVLENTKEQYYDFDYFPDDDGLEERASDDEPFDDIIDLSSPSDI*
Ga0157203_100013146F049561AGGAGGMTKIKLELEETDMFNAIKKIIDHPNRVEIAKALTSIIAPNERLSSIFFKTYFMGAAPEVLPNGTMITVNPRDLSYKANVEGMKKLGLLNISGHATALIKEFKGFGDYTTYLVNFMNVDDNDKTFEDTGFVAYNQVLSVVEEL*
Ga0157203_100013147F096905GGAMESKIFTSVIGFNFELNLVDNNGQPIRTGARRIDYLSSDTPIVGTKIGGEKWFTNFNEPLLSKIRDYRRRND*
Ga0157203_100013148F098924N/AMNVLGKLFNKKKTYPKDSKFEVLIIGEDRTDFQEMLGITDERREELMKLAFNSYKAEDLYSSACKEAVAGCKHINEVVFTISMMAKLKEMANNPLSAILSGINHGE*
Ga0157203_10001315F032245N/AMQEVFSKLISIGLTPNSFYVLYCIHNNIIPDKSVNTSIEVSRLLSGNYLTESLELSGNSLKFIEEIDGFFKKSKKKTSKNLMGDDFLDNIKLYNELFPKGKLPSGVPARVNVKGLENAFRWFFENFSYSWETVLKATDRYVDEYSMNRYNYMRNSQYFVRKQNTDKTWDSTLATYCDMIEADDYEEPNYFKEHIV*
Ga0157203_100013155F025233N/AMYLLLANLMFVLQLHSGHIIATDNVDGRTIYSVPSAGIEYAYKAEIVQYLETGQFKYNEDIED*
Ga0157203_100013166F006840N/AMKPFKTLRGRAILLDLPKRKESVIQLSAKDEEAMMADAVKMWNKLTVFAVGDKVEEVAVGDQVYVRTSALNMEVVERIDIDGEVKLVLTEGDVVIVW*
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