Scaffold Ga0157203

Basic Information
Taxon OID	3300012663 Open in IMG/M
Scaffold ID	Ga0157203_1000219 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Indian River, Ontario, Canada - S50
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	Molecular Research LP (MR DNA)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300012663 Open in IMG/M

Scaffold ID

Ga0157203_1000219 Open in IMG/M

Source Dataset Name

Freshwater microbial communities from Indian River, Ontario, Canada - S50

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

Molecular Research LP (MR DNA)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	19375
Total Scaffold Genes	45 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	14 (31.11%)
Novel Protein Genes	6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (33.33%)
Associated Families	6

Scaffold Components

Scaffold Length (bps)

19375

Total Scaffold Genes

45 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

14 (31.11%)

Novel Protein Genes

6 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

2 (33.33%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lotic → Unclassified → Freshwater → Freshwater Microbial Communities From Rivers And Streams Along An Organic Matter Gradient Associated With Agriculture In Ontario, Canada

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lotic → Unclassified → Freshwater → Freshwater Microbial Communities From Rivers And Streams Along An Organic Matter Gradient Associated With Agriculture In Ontario, Canada

Source Dataset Sampling Location
Location Name	Warsaw, Ontario
Coordinates	Lat. (^o)	44.42735	Long. (^o)	-78.1359	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

Warsaw, Ontario

Coordinates

Lat. (^o)

44.42735

Long. (^o)

-78.1359

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F017827	Metagenome / Metatranscriptome	238	Y
F021984	Metagenome / Metatranscriptome	216	Y
F030087	Metagenome	186	N
F080031	Metagenome / Metatranscriptome	115	Y
F090374	Metagenome	108	N
F103240	Metagenome	101	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0157203_100021910	F103240	N/A	MKYTLVSKIPTRKEVLRIGRAAERWCRVNMGLNSRKKFDPTITYYKSVPADVCMGEYRYWDNEIIVYYNNTPNVKAFIQTIIHEWQHQLQPMTKYEGMDSKHGYDDNPMEIEAMEAEQKYYKRLWEAIKPKINK*
Ga0157203_100021914	F021984	N/A	MRDNKTINMSYTIPRGYTITPKVKYLRTKEGKKRTNLVELTHKRKGIAKLFGNEDYAIKYIQSLEIGKVTANALAGKGAPSIGKHAILVAGKDLEAAKELAGTFDDMTDDERKSLNL*
Ga0157203_100021917	F030087	GAG	MSSETRREVLDIIMEIGYGENTFMLTNSMYGLFDGYLYDELIQYADEVTMSKDLYRRILKVFNTVCKYPKYARYVEPTESYNEPEPIEYYEGMGVADGKLYLATN*
Ga0157203_100021919	F017827	GAG	MNYERFGLYKNIPATKQPVKKAGLPVITFTDMFGRNFFFPYRTKKQRSEISDILRLLKVENNLLNRILSDYSVKMGKYVNESKLRAELKQAFGFSKSNIDSILTIH*
Ga0157203_10002198	F090374	N/A	MNSTHSIVEAYSNIENIHSIERDRENTMADPKYIAWVKELKVSQLYTSRELIHNANALMKQYTHKIGVEG*
Ga0157203_10002199	F080031	N/A	MNEAIVVLEKAEAVLMKRIRAMRDGSPKWAASARLNEIRAALKMIKAYEQNAEMYEAERDDMIVEALTLYPPIAQA*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0157203_1000219

Overview

Ecosystem & Geography

Associated Families

Sequences