NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0157203_1000346

Scaffold Ga0157203_1000346


Overview

Basic Information
Taxon OID3300012663 Open in IMG/M
Scaffold IDGa0157203_1000346 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Indian River, Ontario, Canada - S50
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterMolecular Research LP (MR DNA)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)14843
Total Scaffold Genes42 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)32 (76.19%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (80.00%)
Associated Families5

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lotic → Unclassified → Freshwater → Freshwater Microbial Communities From Rivers And Streams Along An Organic Matter Gradient Associated With Agriculture In Ontario, Canada

Source Dataset Sampling Location
Location NameWarsaw, Ontario
CoordinatesLat. (o)44.42735Long. (o)-78.1359Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F006112Metagenome / Metatranscriptome381Y
F010227Metagenome / Metatranscriptome306Y
F010760Metagenome / Metatranscriptome299Y
F020008Metagenome / Metatranscriptome226Y
F022648Metagenome / Metatranscriptome213Y

Sequences

Protein IDFamilyRBSSequence
Ga0157203_100034621F010760AGGAGMLDISKIVKTYNGKIGCMCGCLGKYSYTQDGAENHGPGYNVQNSVNERSVKIIAKKVLNNPNVEWDGNIAYVEDRVGNRMQAIYFKETV*
Ga0157203_100034622F020008N/AMSAARAKVYTMQNTLQSYGQTSYMLNVSTAKFRRDIEAKKVKFIAKLEKERVVKLQQELAALQAKHSVA*
Ga0157203_100034623F010227GGAGMQATTFNVSDKLTFAHTDTSEDSISTTYDCNVEVQLAGDSCWDCEIEAVTVTSIHIHENFDEDGDSSIHITVCYNVDGDAEYEGSWRLYTDSGFADAISTLLGTAVDFTEQGMQDDGFASMEL*
Ga0157203_100034633F006112AGGAGMKTSYTMYIYKTDRRTKTGERLYSTTVWTDRDQAGMQREVEELYLHHYPRSQFRMEYCPTMKTVTNLMSGVEIEIPHDTPRSCDPSSELYWSM*
Ga0157203_10003466F022648AGGAGMMIVHNVQVYPVYAGHVNDHKVIREEEFKTREDALMWVESYNRHRDEWNINGWVENGNGFKAVYTGAIDAETGENL*
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