NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0157203_1001229

Scaffold Ga0157203_1001229


Overview

Basic Information
Taxon OID3300012663 Open in IMG/M
Scaffold IDGa0157203_1001229 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Indian River, Ontario, Canada - S50
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterMolecular Research LP (MR DNA)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)6443
Total Scaffold Genes14 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)11 (78.57%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Associated Families4

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lotic → Unclassified → Freshwater → Freshwater Microbial Communities From Rivers And Streams Along An Organic Matter Gradient Associated With Agriculture In Ontario, Canada

Source Dataset Sampling Location
Location NameWarsaw, Ontario
CoordinatesLat. (o)44.42735Long. (o)-78.1359Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000980Metagenome / Metatranscriptome814Y
F001125Metagenome / Metatranscriptome769Y
F004051Metagenome / Metatranscriptome455Y
F017829Metagenome / Metatranscriptome238Y

Sequences

Protein IDFamilyRBSSequence
Ga0157203_10012291F001125GGCGGMGDRANFGFKDRKGDTIFLYGHWAGHRMLENLANAVEQARPRWTDESYATRICVSQLVNEEWASETGWGLSVNEIGDNEHKVPVIDWKNKTFTLYEHDLHSPVFSLALDAFVTKYSSQPSMV*
Ga0157203_100122910F004051GAGGMTINDKLYQVGDLFTTLKSKKTGVIKEIHPQASGSVRVLLEMPTKETRWTSVSAKTLLGV
Ga0157203_10012295F000980N/AMTKYQKYTWVCTSDCDALIEYTFKDGYGWPNGVMDLTCRCGTACTLLSVEDATIPYTDTPLQTKEEPMEESTVTTTPIPESYNSNLLVTYKVIRGYSDAEYATDKVTSIEWDLHNGRQAQKHNNVLTGKIDAVKEIICEAYADSQDQDTLREIAEALGIELIKEVEFTASIEVTGTYSFNILENDYDMDLESEVTDALFADSNNGNIEIGDTEVCNVREC*
Ga0157203_10012298F017829AGGMKNRFRVEIYDANKLNDVTIYSEQGVDKEYLTELVFSNIRNFSGKINAYVFDNVKKKKTTAMFLDESTVEFNKNLISNAKKVEVGI*
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