NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0157203_1001394

Scaffold Ga0157203_1001394


Overview

Basic Information
Taxon OID3300012663 Open in IMG/M
Scaffold IDGa0157203_1001394 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Indian River, Ontario, Canada - S50
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterMolecular Research LP (MR DNA)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)5926
Total Scaffold Genes15 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (20.00%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families4

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lotic → Unclassified → Freshwater → Freshwater Microbial Communities From Rivers And Streams Along An Organic Matter Gradient Associated With Agriculture In Ontario, Canada

Source Dataset Sampling Location
Location NameWarsaw, Ontario
CoordinatesLat. (o)44.42735Long. (o)-78.1359Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F010833Metagenome298Y
F019816Metagenome227Y
F032653Metagenome179N
F033030Metagenome / Metatranscriptome178N

Sequences

Protein IDFamilyRBSSequence
Ga0157203_100139412F032653N/AMRLILLLLLLTSCASVKKFEKRYDSTGTTKIDSVHLTFYDSVTKIIEKEQVFTKTITIYDTVRISKDSIIVVPKVVTKWVYETKEKETNNNLTKKDTIAFNRTETAQISIVDKNKVTTQNNFWKALIGLIIAIVLILAYWNRLWK*
Ga0157203_100139414F010833N/AMKYKQLLQLVSSINVVIGNQETKVQKKLFKIYEKIKKHHEDYQAEVEILRLDNAQTDDKDCLLLDEKGNYKYSKEGIKKLTKDIDALNDKVFEFQIINVVNPEGLTEFTFLEDWTTGVEFNKQEEEEL*
Ga0157203_10013942F033030N/AMTEKKWSAGAWKNTTAKGEVINFTINDVKYSMWKNSYKTEDKQPDYKIYINDFNPENKTNSKPKEDTEGLPF*
Ga0157203_10013943F019816N/AMKELLPFERQILLAEVYHYAWYNEEAYADLLAFIDKYQNILDKPVFLTQINNNDTETTHLEPLAYGQNIDTNPSIDEVQ*
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