NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0157203_1001745

Scaffold Ga0157203_1001745


Overview

Basic Information
Taxon OID3300012663 Open in IMG/M
Scaffold IDGa0157203_1001745 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Indian River, Ontario, Canada - S50
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterMolecular Research LP (MR DNA)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)5140
Total Scaffold Genes16 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)12 (75.00%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Associated Families4

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lotic → Unclassified → Freshwater → Freshwater Microbial Communities From Rivers And Streams Along An Organic Matter Gradient Associated With Agriculture In Ontario, Canada

Source Dataset Sampling Location
Location NameWarsaw, Ontario
CoordinatesLat. (o)44.42735Long. (o)-78.1359Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F009462Metagenome / Metatranscriptome317Y
F023844Metagenome / Metatranscriptome208Y
F024559Metagenome / Metatranscriptome205Y
F067423Metagenome / Metatranscriptome125Y

Sequences

Protein IDFamilyRBSSequence
Ga0157203_10017451F067423N/AERDVKLEAKHPKLKKLYDEYIAALGKYRTFESIKGDD*
Ga0157203_100174515F023844GGAGMTSETPAQGVLLMHNWGDSRMYRAVCSCGDDYCSHVIDIEADHEVTVTIYTTTRTNFWSKTRWHHIWTLLTKGYVDSEAVIIMPKQVALNYTNVLQSAIKDLDELKEQKCQK*
Ga0157203_10017453F009462AGGAGMELHESVRNTYKEMVIKEHDGFRLTLKKHEVLSPKGLFSIDMVQESLKDGLVVDSQTYNFFMTKEEMQTLAYGLTA*
Ga0157203_10017456F024559GGAGGMISALLKLILGITLIVIAIVFGPLAGIWSLNTLFPVLNIPYTLETWAAFGLLFGSATGLRFGFKK*
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