Scaffold Ga0157203_1001896

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0157203_1001896

Scaffold Ga0157203_1001896

Overview

Basic Information
Taxon OID	3300012663 Open in IMG/M
Scaffold ID	Ga0157203_1001896 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Indian River, Ontario, Canada - S50
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	Molecular Research LP (MR DNA)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	4878
Total Scaffold Genes	15 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	12 (80.00%)
Novel Protein Genes	3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (66.67%)
Associated Families	3

Taxonomy
All Organisms → Viruses → Predicted Viral	(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lotic → Unclassified → Freshwater → Freshwater Microbial Communities From Rivers And Streams Along An Organic Matter Gradient Associated With Agriculture In Ontario, Canada

Source Dataset Sampling Location
Location Name	Warsaw, Ontario
Coordinates	Lat. (^o)	44.42735	Long. (^o)	-78.1359	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F009334	Metagenome / Metatranscriptome	319	Y
F045751	Metagenome / Metatranscriptome	152	Y
F085611	Metagenome / Metatranscriptome	111	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0157203_100189610	F045751	GGAGG	MGCPLYMEMSDACEIVQNYADLHTGGDILAGLKDMEFCYDDLDKEDRVAYNMFMAQGRKMFQPA*
Ga0157203_100189615	F085611	N/A	MNWELYEVWSVDLDGHEDLVDTTKSLKEARQLAQANVTDYYVECIIYQENEDG
Ga0157203_10018964	F009334	GAGG	MRATVDGQEVTVGDVVCFKSDIEQSGVITAIKKTYAGTSLTLESKYGFSGDYIGGQTITTELARDCWIDG*

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