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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300012664 Open in IMG/M |
| Scaffold ID | Ga0157497_1000190 Open in IMG/M |
| Source Dataset Name | Freshwater microbial communities from Zephyr Creek, Ontario, Canada - S17 |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | Molecular Research LP (MR DNA) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 12967 |
| Total Scaffold Genes | 25 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 21 (84.00%) |
| Novel Protein Genes | 6 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 5 (83.33%) |
| Associated Families | 6 |
| Taxonomy | |
|---|---|
| All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Freshwater → Lotic → Unclassified → Freshwater → Freshwater Microbial Communities From Rivers And Streams Along An Organic Matter Gradient Associated With Agriculture In Ontario, Canada |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Pefferlaw, Ontario | |||||||
| Coordinates | Lat. (o) | 44.25162 | Long. (o) | -79.2626 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F001059 | Metagenome / Metatranscriptome | 790 | Y |
| F001915 | Metagenome / Metatranscriptome | 617 | Y |
| F003521 | Metagenome / Metatranscriptome | 481 | Y |
| F004695 | Metagenome | 427 | Y |
| F012670 | Metagenome / Metatranscriptome | 278 | Y |
| F095354 | Metagenome / Metatranscriptome | 105 | N |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0157497_100019015 | F001915 | N/A | MRGLLRKGNSMEWSLAHPLHDVEDIVEMADSFFGHEADGILKRDRSVFRHRVTVATTEQLFNKSREFIAVCRGERQVVPLYDSKGLLMGHDTVEPLLGFCWFDRGGYTTYSNEEISNAKFHHMDLSLPVRTRVHMLNEMIDQHILWAHTWGVPVVCSTSIRADHDGFMKIHKKRGFTVNGSYAWIRTEEAMKCLTK* |
| Ga0157497_100019016 | F012670 | GAGG | MFDEIRPEGSHVSSDEAKRKAREYAAAKRAEKKAMKLATGEKLPRSYENSGLMNPENRNTAGRPKSIINKVTEYGATFNKLNEERTSMGLPPLTSAMETLIHAMNSDELDIKEKARIADKLAAFESSRAPIISIEHIQNVNKDEDVSAEGAMDDFLDALRKV* |
| Ga0157497_100019019 | F001059 | AGGA | MATYDIEALKADLPTAKELAQFVYDRTQISLDLIGKTKEDQYLVAKNALEGKKVPAEYITSENPYVDRKEQIPVDEVRKLPERSKDLPPEDAMVHFFGATNMPHPLDPQSDKKVGINFKKYNNGMLTYQVMGPLEQIAVGTKINKYGQEVPERFSWIDPRTEELVMRNPDGTFTPRGQGLYTFLIGEKGGGIWTLIDKDMVRATAKNISDPWA* |
| Ga0157497_100019022 | F004695 | AGGA | MLDKQNIVVDGLESPPANKGIEYQVAHEAYLKMVDYLRLTQAKNTLNRLSDYHYLNIAVSNSTEPVRGIDYISPVVSPGIDYSTAVITKCLMPNGKLNFEFERFSEADAAGAQQAAKMALHFINSKNDSYAVIRDWTQDALLHKNGVVMIKPIRDKITQYKEVEGTKDQLRSFEIMAAEKGLIAKRQQMRRIDVDLQGVAQETMMPDETGMPTEPSGEEVQDAIRNNTIYRAKYKMTGYSTNIQIKHVAQHYFVCNPTIPGIKNQDFCGFYDPXXXXPMTIHEAKTQYPYIDLEKFADHAAYGPAGAYQAGALENDLALHARDSTPVPGQGVIASAGADRYSRVVMITTAWLRKDVDNDGEEEIIEIAYSGGYILYVKEVDFIPLAVIVPKPIVGNHFGYSQAERLVPLQEYKTAINRAEIAFAMRSSTAQIGVNPEFVDAEEIQRGVSAMFILDRKFDPAKHVYEFQPMQGNLAYVQDAMERFDADTSRMLGMTNPADTLNPEVMKDGNSGYKLQLAMGPNQLIQDEMVKNCAIGVRDMIYIVWKTMIQYSDDYNIQQLAEAMLPGAGFLDAKSMENFDFIDRNMINVDLALGFLSDENRLTRQQLIMQAQQGFAAIIGQLDPSVPEMFVKARRPFEDTLYALGVKHCDSYLPTLEEAAKMMQAKQAQGPGVAEQEVQSKIDLNKAKTQESQTVSELNMKKAEDIDMDNFFEMEAMKKGKLSAVQID* |
| Ga0157497_100019023 | F003521 | AGGA | MKSLVKNIREYFNKRTKATDAFKEAHVNRQTLVLQNGECASRLLRNEDFALMFNLYRFHMLERLEDSKDDSERIGNAYYVAGVRDFIGFVEKSEYLAKKLEKSKLNEMV* |
| Ga0157497_100019025 | F095354 | AGGAG | MATITSAALGNGNGSYTTDIVVKDLDLTVSNYVKDRTPVTNMAMSKKRKINSTLHIWPNDYFRTPALNAKLEGAAVTAGAAASNTRSNLG |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |