Scaffold Ga0157497_1002086

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0157497_1002086

Scaffold Ga0157497_1002086

Overview

Basic Information
Taxon OID	3300012664 Open in IMG/M
Scaffold ID	Ga0157497_1002086 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Zephyr Creek, Ontario, Canada - S17
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	Molecular Research LP (MR DNA)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	3563
Total Scaffold Genes	7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	3 (42.86%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Associated Families	1

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Cellvibrionales → Porticoccaceae → unclassified Porticoccaceae → Porticoccaceae bacterium	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lotic → Unclassified → Freshwater → Freshwater Microbial Communities From Rivers And Streams Along An Organic Matter Gradient Associated With Agriculture In Ontario, Canada

Source Dataset Sampling Location
Location Name	Pefferlaw, Ontario
Coordinates	Lat. (^o)	44.25162	Long. (^o)	-79.2626	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F027841	Metagenome	193	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0157497_10020862	F027841	GAGG	MSRKKLEENEEFISRDDLEIEVVIDEENNDVYVKFTGLEDRDSANEYAEFLATTLPLLLFETTTLQ*

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