Scaffold Ga0157210

Basic Information
Taxon OID	3300012665 Open in IMG/M
Scaffold ID	Ga0157210_1000185 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Talbot River, Ontario, Canada - S11
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	Molecular Research LP (MR DNA)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300012665 Open in IMG/M

Scaffold ID

Ga0157210_1000185 Open in IMG/M

Source Dataset Name

Freshwater microbial communities from Talbot River, Ontario, Canada - S11

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

Molecular Research LP (MR DNA)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	30710
Total Scaffold Genes	45 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	8 (17.78%)
Novel Protein Genes	7 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (14.29%)
Associated Families	7

Scaffold Components

Scaffold Length (bps)

30710

Total Scaffold Genes

45 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

8 (17.78%)

Novel Protein Genes

7 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

1 (14.29%)

Associated Families

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	(Source: UniRef50)

Taxonomy

All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lotic → Unclassified → Freshwater → Freshwater Microbial Communities From Rivers And Streams Along An Organic Matter Gradient Associated With Agriculture In Ontario, Canada

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lotic → Unclassified → Freshwater → Freshwater Microbial Communities From Rivers And Streams Along An Organic Matter Gradient Associated With Agriculture In Ontario, Canada

Source Dataset Sampling Location
Location Name	Douro-Dummer, Ontario
Coordinates	Lat. (^o)	44.4982	Long. (^o)	-79.1546	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

Douro-Dummer, Ontario

Coordinates

Lat. (^o)

44.4982

Long. (^o)

-79.1546

Alt. (m)

Depth (m)

Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F047677	Metagenome / Metatranscriptome	149	N
F066778	Metagenome / Metatranscriptome	126	Y
F070109	Metagenome / Metatranscriptome	123	Y
F072341	Metagenome / Metatranscriptome	121	N
F082692	Metagenome / Metatranscriptome	113	Y
F084221	Metagenome / Metatranscriptome	112	N
F093876	Metagenome / Metatranscriptome	106	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0157210_100018517	F093876	N/A	MNLFRKKKEPIDLNAKLLPELCSCTIIQWNYTDDIGLEATYAEDIPFMFDARKCVGIQAEVEFRKDGTYYVGERTLALMQGIDNAIVIDVPYNQFKKNFQELKSNIITNDYIISRG*
Ga0157210_100018521	F072341	N/A	MSKELAALVQQSFSRSLSAEERAIAECISSPKLHTLSEQEFRELIAQAAVINSIKALPSDIEVTMLQQLTQNTYRSTSIKDWQNAFLYNAIGKDFERVEAFNLFSISFMADVLKRYEEYKSKVWRELNKALILPEAEIKRAEPTDPIDALHADVDRWNAGKETWVEISAPYNCQRLFRKGIYKKSMWAPEVWARFEDIAKQKVEGKFKASNKVILGESAQTEFDGLQKIELSRLIYIDIIKQINKEKE*
Ga0157210_100018524	F066778	GAG	MNLGAHTFKITYMSYTREPNWQKLKPEIDWDEQEEKLADKLSKYINKNNTVMNQSVVKSQKFVREWNGPSGTIYYFDLVLENGEVGQVGVKDMNSPKIAVGATIHYTSEERTGPTGRKSTNFKLQNPNPFNGAGKGIVQSAYAPRKESPEVQNSISRSVALNNAVLFCKETKGAKPGDVLDTAEIFLAWLKEEEVKVSSPINTKLDEASDDEMPF*
Ga0157210_100018529	F070109	N/A	MKQTLALLILLISMGFAEPCTIYSQSLQAKDTLVSLTTEQVRALLKLKAERDYLKGQVGLLSKSDSIASFVIKDQQKSIDAYSVANEQKAQQLVTVQQELYKEAARKESWRSAALIGIPISFVGGIIFTLLF*
Ga0157210_100018530	F047677	N/A	MKWLKSIFSNESDASSKRVASILALLVCINLSYIGTFTEYKTPEYMFDGLLILAGGGLGLTVIESIFSNKKKSNDSTSQESN*
Ga0157210_100018531	F084221	N/A	MSNNQQQIAEGVTGTVSSILLSVPAWMVDVEFALKIFCLLLSAAASIFTIYKMRKKK*
Ga0157210_100018541	F082692	N/A	MTNPYEDIIYSMTLLRSGVQGKSKEFKQAAGIYHARLKVWQIRAINYTILLGVIGLIALTIYSIA*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0157210_1000185

Overview

Ecosystem & Geography

Associated Families

Sequences