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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300012665 Open in IMG/M |
| Scaffold ID | Ga0157210_1000190 Open in IMG/M |
| Source Dataset Name | Freshwater microbial communities from Talbot River, Ontario, Canada - S11 |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | Molecular Research LP (MR DNA) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 30350 |
| Total Scaffold Genes | 70 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 52 (74.29%) |
| Novel Protein Genes | 9 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 7 (77.78%) |
| Associated Families | 9 |
| Taxonomy | |
|---|---|
| All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Freshwater → Lotic → Unclassified → Freshwater → Freshwater Microbial Communities From Rivers And Streams Along An Organic Matter Gradient Associated With Agriculture In Ontario, Canada |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Douro-Dummer, Ontario | |||||||
| Coordinates | Lat. (o) | 44.4982 | Long. (o) | -79.1546 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F001008 | Metagenome / Metatranscriptome | 807 | Y |
| F002869 | Metagenome / Metatranscriptome | 524 | Y |
| F009605 | Metagenome / Metatranscriptome | 315 | Y |
| F010245 | Metagenome / Metatranscriptome | 306 | Y |
| F011276 | Metagenome | 292 | Y |
| F017266 | Metagenome | 241 | Y |
| F056313 | Metagenome / Metatranscriptome | 137 | Y |
| F068748 | Metagenome / Metatranscriptome | 124 | Y |
| F093757 | Metagenome / Metatranscriptome | 106 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0157210_100019018 | F011276 | GGAG | MIKGLMGTCGVTVSAGNTSLPYVGPNTSNPMTGMLRINNTEMEVFNGSNWQQISTSYATVSLDQEVLDVIQWARTQRTMALNRMTLAQNNPALMKALEAVKRAEDNFELLSKFVEYDNTTSPT* |
| Ga0157210_100019029 | F001008 | GAGG | MSKAKHKPYQWIDGETADRITSLNLKDYRSYLKKELAQWKKNPKTEDNPDGYWLHPEDVSGNIRRIEALNLIINDFIETSDDIK* |
| Ga0157210_100019034 | F017266 | N/A | MIGRQMGKSYVNNLIKNWYQTMAPAPTIKWQRLPGLKLQAYTDDVAPRGFERGLNEADMDPIQVWTEECRCGKRMSFNIWHFKNEKQITMFLIRWAS* |
| Ga0157210_100019036 | F002869 | GGAG | MTNEITTEMLDRVIAHCEQNAFWGQGSAIQRMQDFYFEKTRSSLNEVWPESFTLEDLAQALGIEQVRYRIYYSPDNLTLRLFVFRPHCTYSEEKTMLDLGFVIAQDGDSNNIPNNESILY |
| Ga0157210_100019044 | F009605 | AGGA | MKSILNSIWSVLEAFGQARAAATLARIGDIEGAKAVYK* |
| Ga0157210_100019049 | F010245 | N/A | MTKRTARKDSNYVIYVATHNGLAYIGLTRKGSVTVAKAVKERWRKHISRARHEDRDWEIYRYIKKGNWTDWSHEVITVIRGRAEAYAYERELVKQIQPELNDQYL* |
| Ga0157210_100019052 | F068748 | GGAGG | MITPDTLKTLTTFSAPALTRAARDGGYKGPAFSSCKFLGITNGGQFCYMAVFLVEGGTDSTKIFLTHTGSRVIVDYQLTEAF* |
| Ga0157210_100019059 | F056313 | GGAG | MRIEGLTEHQVELLDTMWEIQEFDELEAWMLTLSRADQRECENLQRLVILETFEELMADSKYPEANRVIDKIRNL* |
| Ga0157210_100019062 | F093757 | AGGA | MKTNRDKNKEHDSREILRVRPKQAAYDFKPLESVIRQWITSSK* |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |