NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0157210_1000208

Scaffold Ga0157210_1000208


Overview

Basic Information
Taxon OID3300012665 Open in IMG/M
Scaffold IDGa0157210_1000208 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Talbot River, Ontario, Canada - S11
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterMolecular Research LP (MR DNA)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)28971
Total Scaffold Genes69 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)48 (69.57%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Associated Families4

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lotic → Unclassified → Freshwater → Freshwater Microbial Communities From Rivers And Streams Along An Organic Matter Gradient Associated With Agriculture In Ontario, Canada

Source Dataset Sampling Location
Location NameDouro-Dummer, Ontario
CoordinatesLat. (o)44.4982Long. (o)-79.1546Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F009531Metagenome / Metatranscriptome316Y
F014144Metagenome / Metatranscriptome265Y
F022197Metagenome / Metatranscriptome215Y
F042331Metagenome / Metatranscriptome158Y

Sequences

Protein IDFamilyRBSSequence
Ga0157210_100020825F014144GGAGMSREVICPKCKRGIEVRWGIFAMDTLNRHIKREH*
Ga0157210_10002083F009531N/AMTQQVAIYEMNYSVSPGGIDCWEATINGYGTSTTGSDFDTAGDALNWVLDRYPGEMLELTVVSQPAYEKEMQ*
Ga0157210_100020838F042331AGGAGGMTHHNEKQSQIKALLASYGRSVLGAGLALYMSGVTDPKTLAYSLVAALAPVALRAVNPNDSAFGKMPALSEVENAVRIVEVKKAPAKKAAVKKTVAKKTAAKK*
Ga0157210_10002084F022197AGGAMTLETQTIEEPTLYADYYSCDLAISITNIKAKNAHHAEAVMQTFIDEIAKIMTDELSWDDAQWGIITNKFIPELQCWVEE*
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