NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0157210_1000216

Scaffold Ga0157210_1000216


Overview

Basic Information
Taxon OID3300012665 Open in IMG/M
Scaffold IDGa0157210_1000216 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Talbot River, Ontario, Canada - S11
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterMolecular Research LP (MR DNA)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)28298
Total Scaffold Genes63 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)47 (74.60%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Associated Families4

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lotic → Unclassified → Freshwater → Freshwater Microbial Communities From Rivers And Streams Along An Organic Matter Gradient Associated With Agriculture In Ontario, Canada

Source Dataset Sampling Location
Location NameDouro-Dummer, Ontario
CoordinatesLat. (o)44.4982Long. (o)-79.1546Alt. (m)Depth (m)
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F009268Metagenome / Metatranscriptome320Y
F044297Metagenome / Metatranscriptome154Y
F075663Metagenome / Metatranscriptome118Y
F089841Metagenome / Metatranscriptome108Y

Sequences

Protein IDFamilyRBSSequence
Ga0157210_100021642F009268N/AMKRWTEKEFSQWVYYDDQDGRIIGAVYKIGNQTGIWGGRVYRLDNTEQVMGQYIDSDYARKSVELYWDIDSRTLLEQ*
Ga0157210_100021648F044297AGGAGMGKMSEISMRLEDLEEMLYTFGLGHEPFIQECKLLCELGFDAEVQCIIYEFETKVFNGELERF*
Ga0157210_100021649F089841AGGAMNTIFFSKRYELRKDYYVIPFSCSDLMDIDTEVSYRDRTETAQKVLDTITDRITLALLRNGYILQSVNFSSMSISCIADKMQVNLSTLVSQR*
Ga0157210_100021650F075663GAGMTKNETIALIIEHLVMQGYSDADKFVNYCTMILPMMSTEELQAELACLE*
 ⦗Top⦘



Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.