NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0157210_1000482

Scaffold Ga0157210_1000482


Overview

Basic Information
Taxon OID3300012665 Open in IMG/M
Scaffold IDGa0157210_1000482 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Talbot River, Ontario, Canada - S11
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterMolecular Research LP (MR DNA)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)16527
Total Scaffold Genes29 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)24 (82.76%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lotic → Unclassified → Freshwater → Freshwater Microbial Communities From Rivers And Streams Along An Organic Matter Gradient Associated With Agriculture In Ontario, Canada

Source Dataset Sampling Location
Location NameDouro-Dummer, Ontario
CoordinatesLat. (o)44.4982Long. (o)-79.1546Alt. (m)Depth (m)
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F014358Metagenome263Y
F034071Metagenome / Metatranscriptome175N
F070994Metagenome122Y

Sequences

Protein IDFamilyRBSSequence
Ga0157210_100048210F034071AGGMTNVIQSQAIDTGILSIAREALVEGVTKTGAVIDNYSSAIASVFDRKDINGKVIAKWYDLEGKEKKGIIAEKALFANTLMDRDAKFIKSIDVDGKRTPTATVDTYWQRVKIASGYVPKGKLKGANDVDAKTATELKTIINRILGAEEAGQECHASTILENLKNSYFVLTGEAYNANK*
Ga0157210_100048215F014358GAGGMLDWKECIDCGDEMHVSRYQAFCRFCEQDRERSAGEERLSWCVVQEYGKGNYQLVTPASARTTLKQTNQKELRG*
Ga0157210_100048226F070994N/AMLGMNGMTATDFKRYIVRWVIDHLKNESGTAQIRVTGYCVYDTRECKTLFEHPDKQVCEKVLTMVLEGEKHGIQE*

 ⦗Top⦘



© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.