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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300012665 Open in IMG/M |
| Scaffold ID | Ga0157210_1000598 Open in IMG/M |
| Source Dataset Name | Freshwater microbial communities from Talbot River, Ontario, Canada - S11 |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | Molecular Research LP (MR DNA) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 14233 |
| Total Scaffold Genes | 23 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 18 (78.26%) |
| Novel Protein Genes | 5 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 4 (80.00%) |
| Associated Families | 5 |
| Taxonomy | |
|---|---|
| All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Freshwater → Lotic → Unclassified → Freshwater → Freshwater Microbial Communities From Rivers And Streams Along An Organic Matter Gradient Associated With Agriculture In Ontario, Canada |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Douro-Dummer, Ontario | |||||||
| Coordinates | Lat. (o) | 44.4982 | Long. (o) | -79.1546 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F003134 | Metagenome / Metatranscriptome | 505 | Y |
| F005697 | Metagenome / Metatranscriptome | 392 | Y |
| F009503 | Metagenome / Metatranscriptome | 317 | Y |
| F024931 | Metagenome | 204 | N |
| F025683 | Metagenome / Metatranscriptome | 200 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0157210_100059810 | F003134 | N/A | MTQWSPVWLVEIDGVEYTDAVLANLTIRSGRTNIYEQAQAGYVNLQLLDVNQTAIPVDINSTISVSVKDTSGTFVPIFGGNVVDIGLEVRDMGSTMFTQTYSITALGALARLPKVIFTDALTRDYDGDQIFEVLSTVLFNTWAQVAGSETWASYDPTITWANAGNNGLGEIDRPGNYDLAARGAGQDPIDVYSLVSALATSGLGYLYEDAQGRIGYADSTHRTQYLTANGYVDLDANHARAAGLRIETRVGDVRNAITIKYGATSSSDVSASNAESIALYGNLAQVITTTLHDATDANNQAAFYLSLRANPQPIFSEISFDLTNPEIDDSDRDNLINVFMGESISINNLPANMGSIFQGFVEGWSFQANYNRLSISLILSPTAYSLQALQWDEISNTFTWSGVSLTLDWARATIIT* |
| Ga0157210_100059816 | F025683 | GGAG | MVLDLLDPQTLGRLVLVIILMVISAAAGYAKGFKEGKREGMARRKAISRHFANKVAD* |
| Ga0157210_100059817 | F005697 | AGGTGG | MGFLDNYEASRERLERWLATYPTGRIETRIVEFSSEKGYVLVEAKAFRNDTDLHPAGIDYAHGYVGAYQPNMRRWYVEDTTTSAIMRVQQLVMGGAERSTKEIMEQVERTPAKIANAEKDYDYWTTKHGDVPSFKTAAEAEQSGVPSLGSSMDEIAKQLGGQLIEEAPQCSHGHRVWKQAHEGAPKNWGGYFCTERTKATQCAPYWYVFTSDGKWKPQV* |
| Ga0157210_100059820 | F024931 | GGTGG | VKMTLTHAEQMVCMLSAIKWETDTGKTMSNPQRYQKDLSTYEYLVETAEAIGSEWVVAKYFDLPFDPYQQKFKGTADVGNGIEVRWTKYVAGQLIVHEYDRPNDIAVLVTGQAPHYFIAGWIPIAMAQRPKYRHSKQPNWWVTQINLQPIENLRKSNYGQSAI* |
| Ga0157210_100059821 | F009503 | AGGA | MDKVQFECRKCKKITVQLIHKITDNLPDGVEVIQCTKCEVMGIAQIGVSNADL* |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |