Basic Information | |
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Taxon OID | 3300012665 Open in IMG/M |
Scaffold ID | Ga0157210_1000897 Open in IMG/M |
Source Dataset Name | Freshwater microbial communities from Talbot River, Ontario, Canada - S11 |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | Molecular Research LP (MR DNA) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 10414 |
Total Scaffold Genes | 27 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 20 (74.07%) |
Novel Protein Genes | 4 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 2 (50.00%) |
Associated Families | 4 |
Taxonomy | |
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Not Available | (Source: ) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Freshwater → Lotic → Unclassified → Freshwater → Freshwater Microbial Communities From Rivers And Streams Along An Organic Matter Gradient Associated With Agriculture In Ontario, Canada |
Source Dataset Sampling Location | ||||||||
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Location Name | Douro-Dummer, Ontario | |||||||
Coordinates | Lat. (o) | 44.4982 | Long. (o) | -79.1546 | Alt. (m) | Depth (m) | Location on Map | |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F011386 | Metagenome / Metatranscriptome | 291 | Y |
F011487 | Metagenome / Metatranscriptome | 290 | Y |
F029107 | Metagenome / Metatranscriptome | 189 | Y |
F039631 | Metagenome / Metatranscriptome | 163 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0157210_100089718 | F039631 | AGG | MNTLDKNTIKHSKFGHLNLEERINLAATMVANGEVLSFRGASADTYNKVMALANKIKQDREFPQCPCGECD* |
Ga0157210_100089719 | F011386 | N/A | MQGNTRDINLDTKELVMDFIDLYQSTLLSHQRVKITCDLLGIDGYLQGVSK* |
Ga0157210_100089725 | F029107 | N/A | MTNHAIISLSNTESTRLTPNGLHSGMDITIQNINEVSYVYLGGEGSLNPEDFGYRLAPGAAWSVELPGTDSLYAIADSDGAYIAIIQTGLE* |
Ga0157210_10008973 | F011487 | AGGAG | MANMYEEMYDEFYSMICPSCRENSVDMEEEVCTHCLLEEMSAMYNEDIALEMSLSLDY* |
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