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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300012665 Open in IMG/M |
| Scaffold ID | Ga0157210_1002012 Open in IMG/M |
| Source Dataset Name | Freshwater microbial communities from Talbot River, Ontario, Canada - S11 |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | Molecular Research LP (MR DNA) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 5618 |
| Total Scaffold Genes | 13 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 4 (30.77%) |
| Novel Protein Genes | 4 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 1 (25.00%) |
| Associated Families | 4 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Epsilonproteobacteria → Campylobacterales → Campylobacteraceae → Campylobacter → Campylobacter coli | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Freshwater → Lotic → Unclassified → Freshwater → Freshwater Microbial Communities From Rivers And Streams Along An Organic Matter Gradient Associated With Agriculture In Ontario, Canada |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Douro-Dummer, Ontario | |||||||
| Coordinates | Lat. (o) | 44.4982 | Long. (o) | -79.1546 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F013634 | Metagenome / Metatranscriptome | 269 | Y |
| F025485 | Metagenome / Metatranscriptome | 201 | Y |
| F031456 | Metagenome / Metatranscriptome | 182 | Y |
| F051709 | Metagenome | 143 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0157210_100201210 | F031456 | N/A | MALIGSFTASTSSVFNLDFLPEKLLISGINSTNQRLSNFSVVTSGTQLMSITNVNRLTALAKFDSGAILQDPSAGNISTVAMYLRLATGRINKATTITGTNPEAFNVNAYAASTNLGSVARRAVEQSINPSANATFDNFEALIFTPTNVLRAQITFANGYTDEYTTEELAALYANYHVTDADGLLETQLVIDADSGAGLISQVVLFNGSGGSTVVLKSDYVQL* |
| Ga0157210_10020122 | F013634 | N/A | MCNSNQNQPMPIQLAPLVGAGLGALQQSKIEKALAGEKTYTKPKTIFGKLIGSVSGRTAAAEASAQTKTAPLSESVMNSLQPSAKSQGTPITGGFSFGGEATKKTYLPFAIVAAIIAAFYFMRRKGGRRRR* |
| Ga0157210_10020124 | F025485 | AGAAG | MENARKLLPVIIGGIVAIVVFFISRKVRQSSGNSQERSEILEKAREAKLAKSILKKSENEESSSNIES* |
| Ga0157210_10020128 | F051709 | N/A | MIPNKERLGIEVAIRPHINTIDIINLELQKVNGSIDRKFMQLDDFSASWSWTMWKNWKDGMQGEISYREYLLIILEAYEK* |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |