Basic Information | |
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Taxon OID | 3300012665 Open in IMG/M |
Scaffold ID | Ga0157210_1002660 Open in IMG/M |
Source Dataset Name | Freshwater microbial communities from Talbot River, Ontario, Canada - S11 |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | Molecular Research LP (MR DNA) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 4469 |
Total Scaffold Genes | 13 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 10 (76.92%) |
Novel Protein Genes | 4 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 4 (100.00%) |
Associated Families | 4 |
Taxonomy | |
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All Organisms → Viruses → Predicted Viral | (Source: DeepVirFinder) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Freshwater → Lotic → Unclassified → Freshwater → Freshwater Microbial Communities From Rivers And Streams Along An Organic Matter Gradient Associated With Agriculture In Ontario, Canada |
Source Dataset Sampling Location | ||||||||
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Location Name | Douro-Dummer, Ontario | |||||||
Coordinates | Lat. (o) | 44.4982 | Long. (o) | -79.1546 | Alt. (m) | Depth (m) | Location on Map | |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F000354 | Metagenome / Metatranscriptome | 1244 | Y |
F002052 | Metagenome / Metatranscriptome | 599 | Y |
F010227 | Metagenome / Metatranscriptome | 306 | Y |
F016962 | Metagenome / Metatranscriptome | 243 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0157210_100266010 | F016962 | GAGG | MDMTELFIVAALGIFIGWQASKRVHLDGFRQLLRALKITEEDLRRAMIRVQSQEWQLDEPEGTKDPAVVDVKLERVGTQIFAYRKSDDRFLAQGTDADSLIARLNENLTPCRVVVAQEDGADLLQKSHT* |
Ga0157210_100266013 | F000354 | AGGAG | MAKVNYDAFPSFDLNEACDHFDSEKPSNWKKIGKFIVADGGEYAHIMETEFDFEDTGDGEYEAFQAGVQYALTKMNIALDAADLPLEIAGVDLVESMGYMLVRTDDTPESFAKRVMKKPVLMVESWVD* |
Ga0157210_10026602 | F002052 | GGA | MAVSREYQFVFTVVCAGEGTPDMARVEEMIDLTMQDLVFDDEFITALDEKQSVTIQVNLVK* |
Ga0157210_10026608 | F010227 | AGGAG | MQATQFNVSDKLTLAGTETNEDSISTTYDCNVEVQLAGDSCWDCELEAVTVTSIHIHEQWWDELDGDSSIHITVCYNVNGDTEYEDSWRLYTDSGFADAISTLLGTEVMFTEQGMQEDGYASMEL* |
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