NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0157210_1002856

Scaffold Ga0157210_1002856


Overview

Basic Information
Taxon OID3300012665 Open in IMG/M
Scaffold IDGa0157210_1002856 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Talbot River, Ontario, Canada - S11
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterMolecular Research LP (MR DNA)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4221
Total Scaffold Genes12 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)8 (66.67%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Associated Families4

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lotic → Unclassified → Freshwater → Freshwater Microbial Communities From Rivers And Streams Along An Organic Matter Gradient Associated With Agriculture In Ontario, Canada

Source Dataset Sampling Location
Location NameDouro-Dummer, Ontario
CoordinatesLat. (o)44.4982Long. (o)-79.1546Alt. (m)Depth (m)
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F003080Metagenome / Metatranscriptome508Y
F018716Metagenome / Metatranscriptome233Y
F019762Metagenome / Metatranscriptome228Y
F024559Metagenome / Metatranscriptome205Y

Sequences

Protein IDFamilyRBSSequence
Ga0157210_10028562F003080AGGAGMTTAKDLTDQLIYRAKNLQEFIVEREFDRIPAGVVKFDIQHSVGQSARIFVPALTQTEAEQMVDEWFEEDVE*
Ga0157210_10028564F018716N/AMNKDNNTITVVWDNQNGFWWNETCAMVLEVFGLPGDRYESRPEHDYMSFKFKNTKDADLCKILLSERL*
Ga0157210_10028566F024559GGAGGMMTSLIKLIVGLTLIALVIVFGPLLGIWSLNTLFPVLAIPYTWETWAAYFLIFGSLTGLRFGGKK*
Ga0157210_10028569F019762AGGAGMELHESVAHTRKEITVKESEGFRVRMVKHEVLMPKGTFSLDIIQESLKDGKVADSQTYNFFMTKSELQTLAHGLTL*
 ⦗Top⦘



Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.