NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0157210_1004566

Scaffold Ga0157210_1004566


Overview

Basic Information
Taxon OID3300012665 Open in IMG/M
Scaffold IDGa0157210_1004566 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Talbot River, Ontario, Canada - S11
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterMolecular Research LP (MR DNA)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2934
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)6 (100.00%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → Nostocales → Aphanizomenonaceae → Aphanizomenon → Aphanizomenon flos-aquae → Aphanizomenon flos-aquae WA102(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lotic → Unclassified → Freshwater → Freshwater Microbial Communities From Rivers And Streams Along An Organic Matter Gradient Associated With Agriculture In Ontario, Canada

Source Dataset Sampling Location
Location NameDouro-Dummer, Ontario
CoordinatesLat. (o)44.4982Long. (o)-79.1546Alt. (m)Depth (m)
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F010618Metagenome301N
F016812Metagenome244Y
F034183Metagenome175Y
F054036Metagenome140Y

Sequences

Protein IDFamilyRBSSequence
Ga0157210_10045661F034183AGGMNKLKTLAENINEEEAALIFQLLLSAFETANLQKVQYENEDLPDESSLMVNVELNTRNVPADVIQKLLDLLK*
Ga0157210_10045662F016812GGAMNTLYPELINEEDEATFAANLFKLYKLDERCGKLEAPSFRVLYLKDKKTMVHISNHFNSPTCIISYYNIKDKSCVDARTISKKLYNKIYNHYFEIKMNHY*
Ga0157210_10045664F054036AGAAGLHTYISYDILEKRPIMNLDFKVSGKLNVPEDAIKHYDVAGKLYALEFNSKMYMLQVCLVAESSDGEYEMIHQYDEMLLNDISNLRYNDAEFSES*
Ga0157210_10045666F010618GAGMSIQELIVKLQEIEAKYPQYSQDTEVVLAIHTENEFSEEVGISYIDEVVHKALDTHSGYICRIVLTGEIYTAE*
 ⦗Top⦘



Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.