NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0157210_1005804

Scaffold Ga0157210_1005804


Overview

Basic Information
Taxon OID3300012665 Open in IMG/M
Scaffold IDGa0157210_1005804 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Talbot River, Ontario, Canada - S11
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterMolecular Research LP (MR DNA)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2457
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (40.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lotic → Unclassified → Freshwater → Freshwater Microbial Communities From Rivers And Streams Along An Organic Matter Gradient Associated With Agriculture In Ontario, Canada

Source Dataset Sampling Location
Location NameDouro-Dummer, Ontario
CoordinatesLat. (o)44.4982Long. (o)-79.1546Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001055Metagenome / Metatranscriptome791Y
F012666Metagenome / Metatranscriptome278Y
F092032Metagenome107Y

Sequences

Protein IDFamilyRBSSequence
Ga0157210_10058042F092032AGGMSAQNDGVVCLYGIGAGQEASLFVQAYSVSSGFNNTGTVVDETGLTKTSRYDDRRTEISVEGVAKSSSIPTLGAKLTFTVKTASAYPGGTASVSFSGTITKVDDRGSSKGFVTVSLTAESFEGITY*
Ga0157210_10058043F001055N/AMGTRSIRHIVEATLATYLSTEAGLSAVQFLTGDSAATQTLPKAVVLCDSASPPADLPEGLGNFSCSVRVTLFSNADDTTLAEHRARCALISGNMNDLTSIQAAFVATGDATCYDVTVRSEDEGIDERSWATSFAYDVLTVLPPA*
Ga0157210_10058045F012666N/AFACLISDPAVQTVLEAGGYMERTQYSVRIPAATASWSLPDGSIGASTAIISGGVPIASLAQGKKIVAGGKNVRITTQTYKPGSAWVTLIVIDDNQ*
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