NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0157498_1004968

Scaffold Ga0157498_1004968


Overview

Basic Information
Taxon OID3300012666 Open in IMG/M
Scaffold IDGa0157498_1004968 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Central Basin Lake Erie, Ontario, Canada - Station 1208 - Surface Ice version 2
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterMolecular Research LP (MR DNA)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2200
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (40.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater, Surface Ice → Freshwater Microbial Communities From Central Basin Lake Erie, Ontario, Canada

Source Dataset Sampling Location
Location NameOntario, Canada
CoordinatesLat. (o)42.6244481Long. (o)-80.9227115Alt. (m)Depth (m)
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F018175Metagenome236Y
F021538Metagenome218Y
F043400Metagenome / Metatranscriptome156N

Sequences

Protein IDFamilyRBSSequence
Ga0157498_10049683F018175GGAGGVEKLPKNQKEYYHDKIREYEKRTGKCMNVKGVSKIYDYTIEKAEYNTPAAIDMMQKHGCYIYHDLLAEEDFRSNGTNWQMYGFAYVNGKTYKYYYETKQWGGEVKEFTHYQHSSKTWKAAKLDKTNFPYTLDPGEDYLPYAVENKHIGSNFDDFLKTNNIELKRNINWAVKMLNAGKMMTREGNPSLTLFPKKYDHAESTITTEDLFAEDWVVVPTKLFKDVLDDLNAGKTIRRKSWHPDWGVGKYSRYGKIIYLDLIADDWEVVDVVAEVDKNQQDIKDGKY*
Ga0157498_10049684F021538N/AMETTIINCDCLCHSLHVRPDVELKTVDISLWNYGFNDGKLHWKKRLQILMDGFAYSDLVVLDKEELDKLITVLEDARGKIA*
Ga0157498_10049685F043400N/AMTTKALKLKEKKMFNFFNKKLPSDFDQVQEKGREIGEIFYKPNQEQPDLNLFDKVNKSRFENFEVTLFASFFEKLELIPTVDLGDVNLKVRTTNPSAPIDADLCQVWMRRTYTNPTTGQTTEQWLNWVPNDDVAKKYFKFSLFSGETQTFNFDISTFDVGKYDSFRFIFFTNHWDVLADQMAEDVSFEILTKQKRV
 ⦗Top⦘



Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.