NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0157498_1005570

Scaffold Ga0157498_1005570


Overview

Basic Information
Taxon OID3300012666 Open in IMG/M
Scaffold IDGa0157498_1005570 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Central Basin Lake Erie, Ontario, Canada - Station 1208 - Surface Ice version 2
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterMolecular Research LP (MR DNA)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2065
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (83.33%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater, Surface Ice → Freshwater Microbial Communities From Central Basin Lake Erie, Ontario, Canada

Source Dataset Sampling Location
Location NameOntario, Canada
CoordinatesLat. (o)42.6244481Long. (o)-80.9227115Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000450Metagenome / Metatranscriptome1126Y
F000980Metagenome / Metatranscriptome814Y
F031384Metagenome / Metatranscriptome182Y

Sequences

Protein IDFamilyRBSSequence
Ga0157498_10055701F000980N/ACTSDCDALIEYTFKDGYGWPNGVTDLTCRCGTSCTLLSVEDATIPYTDTPLPKEERMETETPAVTVPDTYNPNLLVTYKVIRGYSDAEYATDKVSSIEWDLHNSRTNSKTVQVLNSKIDTVKDIITEAYADSDDQETLRAIAEALDIELTRTVEWSASIEVSGTIELDLLAGYDTDIESEITDALFADSNNGNIEVTDQEVCNVSEN*
Ga0157498_10055705F000450AGGCGGMGDRANFGFVQPNGNTIVLYGHWAGHNMLAQLAEAVFKARPRWSDPSYATRITISQMINNDWNSETGWGLHVNEIGDNEHKIAIVDFNQMTFSLHEEDSHYNLNNKVRGMKNEALFTMDLRAFVEKYTDVAILV*
Ga0157498_10055706F031384AGGAMPNWVYNGLTVEGNPSEITDIVAQLNGPFKQVNDSWNTESGQMEKKLTTYPNPVFAFYNIYN
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Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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