NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0157498_1007979

Scaffold Ga0157498_1007979


Overview

Basic Information
Taxon OID3300012666 Open in IMG/M
Scaffold IDGa0157498_1007979 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Central Basin Lake Erie, Ontario, Canada - Station 1208 - Surface Ice version 2
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterMolecular Research LP (MR DNA)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1713
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater, Surface Ice → Freshwater Microbial Communities From Central Basin Lake Erie, Ontario, Canada

Source Dataset Sampling Location
Location NameOntario, Canada
CoordinatesLat. (o)42.6244481Long. (o)-80.9227115Alt. (m)Depth (m)
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001326Metagenome / Metatranscriptome721Y
F008184Metagenome / Metatranscriptome337Y
F015865Metagenome / Metatranscriptome251Y

Sequences

Protein IDFamilyRBSSequence
Ga0157498_10079792F015865N/AMGEYMIASDNKAADDLLTAANSSGVWDGTVADLLKSIYDSAKDVSTNRNWMPTHMFVSVDVWSQLGQLVDTTNRPIFPFIGAGLTGQNALGGGSATSWNGTPLGLQLVVDSNFAAKTMIITRVGQGQGDAYEFYESIQGLLSVDTPSTLGKTMSFHGYVSTFAAIGGMIRKITQA*
Ga0157498_10079793F001326GGAGMAVYSVTQKYLIDNYAVLQLLTPSEIAVGQSITVASVDATFNGTYTVRALPQYLYIGIDTEGDLLYDIEIPIANQVLFAKTASNVERTAASGSITYTQTCSWVTAAQLVTYLGVQITNPSDDYTLITQAVSAGNDFAYRRRQEAGYIDSLTTSPGGDATLGTLMYCAALWRSRGSLENTFASFDGMGTAPQQSLTPIVKQLLGIDRPACA*
Ga0157498_10079794F008184AGGMAYTDALNGAIDDLTTTLTAVTGLRVVNDPTKLVPNCVYIDAPSFTTVAGNGNIIRMDFPIKVIGSGPAGLPVLRSILD
 ⦗Top⦘



Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.