NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0157208_10000084

Scaffold Ga0157208_10000084


Overview

Basic Information
Taxon OID3300012667 Open in IMG/M
Scaffold IDGa0157208_10000084 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Maskinonge River, Ontario, Canada - S15
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterMolecular Research LP (MR DNA)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)31349
Total Scaffold Genes52 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)14 (26.92%)
Novel Protein Genes10 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (30.00%)
Associated Families10

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lotic → Unclassified → Freshwater → Freshwater Microbial Communities From Rivers And Streams Along An Organic Matter Gradient Associated With Agriculture In Ontario, Canada

Source Dataset Sampling Location
Location NameKeswick, Ontario
CoordinatesLat. (o)44.22385Long. (o)-79.4212Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F012871Metagenome / Metatranscriptome276N
F021113Metagenome / Metatranscriptome220Y
F023350Metagenome / Metatranscriptome210N
F027518Metagenome / Metatranscriptome194N
F028175Metagenome / Metatranscriptome192Y
F036240Metagenome / Metatranscriptome170N
F039140Metagenome / Metatranscriptome164Y
F041777Metagenome159Y
F046371Metagenome / Metatranscriptome151N
F091602Metagenome107N

Sequences

Protein IDFamilyRBSSequence
Ga0157208_1000008415F041777N/AMKKTLLFIAMLFAGMLIAGTIDESTRQLEQQPNHTTK*
Ga0157208_1000008418F023350N/AVTLDHYIEGHYKKFKELAKNISRGEDYYEDLLHDSLLSMFGSKHIENLIDTGDFEFYLIRVMYLAVNSPTSPFYKQTIAWNRNRRDFKEYAHEVDKTWLGARMTNEQLDILISRLSEFERLIFQEYIFEGFTYRELSKQTGIPMPFLYRTIDNIKQKIRANVIRKKQ*
Ga0157208_1000008425F046371N/AMSENKLNFLKSQITAFNPTWTKEQVEMEAIRIYNEANTIDDDDEGCLYCGS*
Ga0157208_1000008430F036240AGGAMANEQSAPNFFAVVNDMAKRFVELMQSDYRMKRKVGRNYTNAIASGTLEKSLAYRLKIKGKEIDISVYAKGKAGQYFLFREKGVNGTQRSQGAPYSFKRGSGSKPAKGQMSPMQQAIYDWMSIKGIRLRDKSSGKFKKSSEELKQTVAKLIMFKVRRDGIKGWNAFEYAFDNIWDEYEAKVVAAYGKDFNATIENQFNDIQ*
Ga0157208_1000008431F028175N/AMAITIDDQPYEYTPVGQRLMLVASSTNVANVGFRFVFDFGSFQVNVQPNAENKGVLDLAPIFRESLQHDVGAADATMNDEYTSVAFISCTIKEGWLVDGVFTVSGSGMADIDDVYAFLAEYQVSNGYKPDPNTRYALNGVTKYLLSERTTDTHKWSEAAARGLSSNWVYIPTRLADFGQLYSISNNGLLGDNIATDLFVSTYDNTNTLIEAVNYALSTELNSVSRFGAYPQNLIGGGLDFTNVKYYTIQAGESISPPIYTAASRVYCFYIVPDDCRFDNVRLGWTNTCGGIDYFNFTKKSELSFNYDRKQYQKVIGSYNTATFGFNTYDRGATDRYVTTTKGLQINSDWVSVGEFNLLQTLCRSNDVFIINDDGTQTPVLVDTQNFVIKDERYSKLYNVTLNLKYSQPVGL*
Ga0157208_100000844F012871AGGMYGIALPEAQLLQMLHEFIVKHFRWVTFEHFNLAFEMNAANELSKKCEHFGALSVSFIGDVLTAYKPHRDKANLQIQREIAEAIEEKSQQIKENEMAVNDDSWRRMLAEDVESFKQSKFTTLELRGVSMMRWLEESKRITAETFTDDEYNLCKAKARKTVFNEQQLSKGMVERMSDRKRQLLKESIQFEGFRELYKLYLSKQ*
Ga0157208_1000008444F027518N/AMNTEHEITLIHEQLQDMDKKIDRIYNVLIGDDEMKIEGLVSKVQKHDKYIQNQRLQVARLGGIATAAGVVGGLLVQFVLKFL*
Ga0157208_1000008445F039140N/AMKDWLKSLLTSCSKVSSKRIVAIFVTINLIVLSYVATFTYYVCPIAMFDTLALLTGGLFGGTVIERFTKQKSNGTTTDRSEENNSGDL*
Ga0157208_1000008447F021113AGGAMRKNILAIVLLLIGTTTIWTIICWHWFGKPVAKNETTEVQKQDSIINYNAGEYDRLLQEQIELYKELRTYEDAQSKAKTTYQRTRDIVLIRDTIVRVDVLRLVNSCDSVIASDSLVIDNLKEQLNIEGEKVNNLQETIVAYEQKTDVLTEEINTLTAEKKNLDKQKRRRNRALVVTSSVAILSTFVLSILL*
Ga0157208_100000847F091602N/AMKSDLTFCPNCDKELLGERVDFVLQDQQFEDWDSAYEFIDDEGEIVLCDDCHEWDYADDDAKGEGWD*

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