NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0157208_10000102

Scaffold Ga0157208_10000102


Overview

Basic Information
Taxon OID3300012667 Open in IMG/M
Scaffold IDGa0157208_10000102 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Maskinonge River, Ontario, Canada - S15
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterMolecular Research LP (MR DNA)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)29452
Total Scaffold Genes50 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)11 (22.00%)
Novel Protein Genes13 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (7.69%)
Associated Families13

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lotic → Unclassified → Freshwater → Freshwater Microbial Communities From Rivers And Streams Along An Organic Matter Gradient Associated With Agriculture In Ontario, Canada

Source Dataset Sampling Location
Location NameKeswick, Ontario
CoordinatesLat. (o)44.22385Long. (o)-79.4212Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000957Metagenome / Metatranscriptome821Y
F001055Metagenome / Metatranscriptome791Y
F001338Metagenome / Metatranscriptome719Y
F001780Metagenome / Metatranscriptome635Y
F001923Metagenome / Metatranscriptome617Y
F002038Metagenome / Metatranscriptome600Y
F002413Metagenome / Metatranscriptome561Y
F003583Metagenome / Metatranscriptome478Y
F004790Metagenome / Metatranscriptome423Y
F006659Metagenome / Metatranscriptome367Y
F024551Metagenome205Y
F042864Metagenome157Y
F053888Metagenome140Y

Sequences

Protein IDFamilyRBSSequence
Ga0157208_1000010219F001780N/AVTKASINDLSAPAKEAKSFDAWFFSQPKKVQEKMRENGVLPYREMSQPRHVFSVDANHPAWSTKDGDNLRKETEAFISRDHVGVMLKGFIDALAATDNFAFRRHVETVRWALSLPGCLDSRTIGKMYGRSHFWMRSRAKEIQRAVNSDAVGMFPHVNARRDKHKQTAPRPAQHNP*
Ga0157208_1000010224F004790N/AMETLTRETIQWGLRIGIAPDRMAFLASCPKFTVCHGNRKSERNVKDNPNHHLQRLGSCWWFRLRRRGKDIVENIGGDLTIARQRRDEMLAAFDAGKPIPYLSTK*
Ga0157208_1000010225F002413N/AMTDAPTPMAAPTLVLISGFARAGKDTLASGLLEWSTRPAEHINFADALKEAANHYMDYLGLEGDFFREDFKVDNRDFLVHAGKFARRMDRDVFARHFANWCPVMKHHDQPSPETVVCSDWRYINELRVCQDILWEKGWKVRTVYVATAGVGPANDEELDSIAEIRASHLFDQEFIFKPNARNQIMSEGRNLAKSWRL*
Ga0157208_1000010226F001338N/AMEPNNDRPPLKSIEVNGTYKLKLIKPKFEKVKHNEDGTSSARLFFLDDQGNCLSKSYGSKYAKPLAMLIGKFSGKFTEELRLDATPAEFMQYIEPACGKTCLIGVEAIPNGEWNGKPQFKYKLTFPKGSQKPVVPEANTEAPPF*
Ga0157208_1000010229F002038N/AMERTHATPKGILTIAKTVPGQYALLLFLDGFPYVEFTSRKHADYLTELNAWKRKTYPSLARSDVRFFTLAPSGEIKELAFNR*
Ga0157208_1000010232F006659N/AMKKDPKLPADYRIIADSSYIVLPDQKVARLLTPTVRNGVTYYNLFVPGYTRMSLADIEATIKAGEVAKANEPTK*
Ga0157208_1000010236F000957N/AMTDFRHLDGMRHLLEEVFEINERILTGDICSNKTAIQSDRMKKLLHHYHEALHEDGASKVSLQAYVAAGGWVGITYSYEVDGFEVAGSQVPRRV*
Ga0157208_1000010237F024551N/AMLIVKPDSLPRLWWLFPWSVARQLHRNCNALRALADKTDDENRLLRQEVTRLSHSREHWIAKHDRAYAVAMHNERVIADMESRIIRGAITPDAHPHD*
Ga0157208_1000010240F053888N/AMNQEPIDLITVGDRPIRLSRPVLPHAARRLAETLPQLNALNTAGKSQADAAKALEVSVGAVRTWIALAGISWSNLNRRGPYAKRNK*
Ga0157208_1000010241F042864N/AMTTKTKKAELVSDKAMNELLKHRVLDFRKAASVKDKDGYVKGIGSYALYGIDHARGQLVVLASEPTAGDFNKYVTAKAKADVCALFDQVVEYRDAGTAKSPKVTILCWHLA*
Ga0157208_1000010243F003583GGALAVCLLTAFAGLSAFASAYIAGVVLDLLQSRDALVMIVTDAGIKSDSVSVEQGLSAATLALKAVRDLGWALAVGCLGVGMAVFLRSRRQNAS*
Ga0157208_1000010244F001923N/AVSAAPFNPEDIPKEVKDGLVASILGGLAMTARLLLSTEPVSLPWVARRVAAAAITAAIVGYAVQEHIASPGLRMGVVGAAGYAAPECLDYLLKYVKARGEKEVASVVGKPSKPHGKGKANKPAAKRGK*
Ga0157208_100001029F001055N/AMGTKSIRHIVESVVSTYLSTQTGLTSVTFLTGDSAVIQTLPKAVILCDSARAPGDLPEGLGNYSCSVRITLFSNADDTTLADHRARCAALSGNMRDLTSIKAAFVASGDATCYDVTIGSEDEGIDERSWATAFSFDVLVVLPAA*
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