NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0157208_10000143

Scaffold Ga0157208_10000143


Overview

Basic Information
Taxon OID3300012667 Open in IMG/M
Scaffold IDGa0157208_10000143 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Maskinonge River, Ontario, Canada - S15
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterMolecular Research LP (MR DNA)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)24334
Total Scaffold Genes28 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)21 (75.00%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Associated Families4

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lotic → Unclassified → Freshwater → Freshwater Microbial Communities From Rivers And Streams Along An Organic Matter Gradient Associated With Agriculture In Ontario, Canada

Source Dataset Sampling Location
Location NameKeswick, Ontario
CoordinatesLat. (o)44.22385Long. (o)-79.4212Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000324Metagenome / Metatranscriptome1299Y
F020318Metagenome / Metatranscriptome224Y
F042732Metagenome157Y
F082586Metagenome / Metatranscriptome113Y

Sequences

Protein IDFamilyRBSSequence
Ga0157208_100001431F082586GGAMREFWLWVIVVTLIIFCLMVLSFAIVHTNSQLKKADAMILRLEEKEKKRNEKPRIDPVE*
Ga0157208_1000014310F000324AGGMQAVPLAHSVVFNGVTLLVYHASKGEGLPQHEHSYPHLTFVHAGKLIVRKENKELVMTKDTQPVNLVANEWHELEALEDGTVFVNVFAEGKY*
Ga0157208_1000014325F020318AGGAGMEAVSPNTFEEWQHHPVTKRLMQMLSKDREAMKEGLVSSAYDDESEVKGRCRAIAIILDLEYGDLFEATQKVETNE*
Ga0157208_100001439F042732AGGMSSTYSITRDQVISLALRKLGVLEIGDTPDAATVANANMSLNLLIKQMSTEGLKIWKTSELIVPLIANQTSYILGGSSSTLMYDSQAPSVPITDRPLKVIQGWYRNLEVTPNIDTPFMVVSKNEYNTLGSKFSTGTANTVFYDTKALNGILYVFLTPDANAAANLELHLVAQMPLNDITSADQIPDFPNEWMNTLVWNLADQLSLEYGVPMNTRQEITNRATAYRELLNNWDVEVASTFFAPDFRSSSNNSYSR*
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