NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0157208_10000179

Scaffold Ga0157208_10000179


Overview

Basic Information
Taxon OID3300012667 Open in IMG/M
Scaffold IDGa0157208_10000179 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Maskinonge River, Ontario, Canada - S15
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterMolecular Research LP (MR DNA)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)21239
Total Scaffold Genes45 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)30 (66.67%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lotic → Unclassified → Freshwater → Freshwater Microbial Communities From Rivers And Streams Along An Organic Matter Gradient Associated With Agriculture In Ontario, Canada

Source Dataset Sampling Location
Location NameKeswick, Ontario
CoordinatesLat. (o)44.22385Long. (o)-79.4212Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000324Metagenome / Metatranscriptome1299Y
F002689Metagenome / Metatranscriptome536Y
F073561Metagenome120Y

Sequences

Protein IDFamilyRBSSequence
Ga0157208_100001795F000324N/AVIQTAIPAHSVTYDGATLNVYHANKGQGLPRHEHIYAHLTMCHAGSILVTKEGKSLIMTKDTQPVNLVANEWHEIEALEDGTVFVNVFAEGKY*
Ga0157208_100001796F073561GGAMAVFSQNTLTQVSGFNNPIIAGELVWEQQTYWNLALNTLGVPINLTGVTIDAQIVRRTVSNLNDTRNGLTFDVGNYLPTPTPVSLTIANRNDAAGTFTLVIDDSSWDLISSDPELDINAVDCVCFTGRIKISFPASSPTPAEDNIIFLMFLVRSDGVVVV*
Ga0157208_100001799F002689N/AMMATINATEARLDTHEEVCAMRYEQINARLKRLEAIIIKAFGIMTVGMAGVIWSTLIPHMK*
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