Scaffold Ga0157208_10000432

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0157208_10000432

Scaffold Ga0157208_10000432

Overview

Basic Information
Taxon OID	3300012667 Open in IMG/M
Scaffold ID	Ga0157208_10000432 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Maskinonge River, Ontario, Canada - S15
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	Molecular Research LP (MR DNA)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	12294
Total Scaffold Genes	39 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	31 (79.49%)
Novel Protein Genes	3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (66.67%)
Associated Families	3

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lotic → Unclassified → Freshwater → Freshwater Microbial Communities From Rivers And Streams Along An Organic Matter Gradient Associated With Agriculture In Ontario, Canada

Source Dataset Sampling Location
Location Name	Keswick, Ontario
Coordinates	Lat. (^o)	44.22385	Long. (^o)	-79.4212	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F000354	Metagenome / Metatranscriptome	1244	Y
F019477	Metagenome / Metatranscriptome	229	Y
F085611	Metagenome / Metatranscriptome	111	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0157208_1000043226	F085611	N/A	MNWELYEVWGVDDSGAEALIDTTNSLKEARLIAETNLTEDLIECIIYREDANGDLVEVEVIA*
Ga0157208_1000043234	F019477	AGGAG	MTGLYFSELRIGRLFHLNGNDYIKQSTRTARLLAYDRVFYIGKTEYIHPIAY*
Ga0157208_1000043237	F000354	GGAG	MAKVNYDNFNRFDISDACDYFDCESQAQWKKIGKFIVADGQEYVQVMEKEFDFEDTTESEYAAFDAGVKYAFTKLNAALEAAGVELEICEADMVEAMGFVLTRVDDTPEDFVKRALKKPVMMVDSWV*

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