NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0157208_10001017

Scaffold Ga0157208_10001017


Overview

Basic Information
Taxon OID3300012667 Open in IMG/M
Scaffold IDGa0157208_10001017 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Maskinonge River, Ontario, Canada - S15
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterMolecular Research LP (MR DNA)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)6855
Total Scaffold Genes19 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)16 (84.21%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lotic → Unclassified → Freshwater → Freshwater Microbial Communities From Rivers And Streams Along An Organic Matter Gradient Associated With Agriculture In Ontario, Canada

Source Dataset Sampling Location
Location NameKeswick, Ontario
CoordinatesLat. (o)44.22385Long. (o)-79.4212Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001915Metagenome / Metatranscriptome617Y
F012670Metagenome / Metatranscriptome278Y

Sequences

Protein IDFamilyRBSSequence
Ga0157208_1000101718F001915AGGAGLKKIARLAPQENSMEWSLAHPLHDVEDIVEMADSVFGHEADGILTRSRAVFRHRVTMATTEQLFNKSREFIAVCRSFEPIEHGTAAGDLLGFCWFDRGGYTTYSNEEISNAKFHHMDLSLPVRTRVRMLNEMIDQHILWAHTWSVPIVCSTSIRADHDGFMKIHKKRGFIVNGSYAWIRTEEAMKCLTK*
Ga0157208_1000101719F012670GAGGMFDKIRPEGSHVSSDEAKRKAREYAAAKRAEKKAMKLATGEKLPREPRAGGFSDPANRNTAGRPKSIINKVTEYGATFNKLNEERTSMGLPPLTSAMETLIHAMNSDELDIKEKARIADKLAAFESSRAPIISIEHIQNVNK
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