NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0157208_10001320

Scaffold Ga0157208_10001320


Overview

Basic Information
Taxon OID3300012667 Open in IMG/M
Scaffold IDGa0157208_10001320 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Maskinonge River, Ontario, Canada - S15
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterMolecular Research LP (MR DNA)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)5703
Total Scaffold Genes17 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)13 (76.47%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)5 (100.00%)
Associated Families5

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lotic → Unclassified → Freshwater → Freshwater Microbial Communities From Rivers And Streams Along An Organic Matter Gradient Associated With Agriculture In Ontario, Canada

Source Dataset Sampling Location
Location NameKeswick, Ontario
CoordinatesLat. (o)44.22385Long. (o)-79.4212Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000447Metagenome / Metatranscriptome1128Y
F000808Metagenome / Metatranscriptome882Y
F019325Metagenome / Metatranscriptome230Y
F039631Metagenome / Metatranscriptome163Y
F093845Metagenome / Metatranscriptome106Y

Sequences

Protein IDFamilyRBSSequence
Ga0157208_1000132011F093845AGGAGMIKVTLTSTSGTTKGMSFDTKENIEEFIKQYSAILPIGTAVCIDAPLIGIHSGWIQGTKQALV*
Ga0157208_100013202F000808AGGAGGMEYLYSLTISYDGKLVNAVKSVDLLAIVDAWNKCVDYGDAKEYATYNLSDTSGKMYTKTFYRNGNVEVK*
Ga0157208_100013203F000447AGGMGYVEIFRIDNEGAGWIDLSQANSDELFNLEVGLLNEGALFSTKEAN*
Ga0157208_100013208F019325AGGTGGMTTLTEELFSTIVHEYHNGGVKSSYGLDAYTRKEVLMYLIRSKGCQCINCI*
Ga0157208_100013209F039631AGGMNTLDKNTIKHSKFGHLDLNARITLAATMVANGEVVSFRGASADTYNKVQALANKIKLEREFPQCPCGECD*
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