NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0157208_10002665

Scaffold Ga0157208_10002665


Overview

Basic Information
Taxon OID3300012667 Open in IMG/M
Scaffold IDGa0157208_10002665 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Maskinonge River, Ontario, Canada - S15
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterMolecular Research LP (MR DNA)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3375
Total Scaffold Genes11 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)8 (72.73%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Associated Families4

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lotic → Unclassified → Freshwater → Freshwater Microbial Communities From Rivers And Streams Along An Organic Matter Gradient Associated With Agriculture In Ontario, Canada

Source Dataset Sampling Location
Location NameKeswick, Ontario
CoordinatesLat. (o)44.22385Long. (o)-79.4212Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000263Metagenome / Metatranscriptome1424Y
F000441Metagenome / Metatranscriptome1136Y
F038241Metagenome / Metatranscriptome166Y
F050377Metagenome / Metatranscriptome145Y

Sequences

Protein IDFamilyRBSSequence
Ga0157208_100026652F050377AGGAMSTPTTTREYLKTQGITVGQRGRFSAAAKNVIKEAVEKGVTFTDSKNVK*
Ga0157208_100026654F000441AGGAGGMSDVYINDQLSKAQKLLWGGSETENIEAHNIIAKLIKDKVEQADL*
Ga0157208_100026656F000263AGGMETITLPSHLQRMVDAGVTGLDIMHGELKNLMLIAEQELAEAQAIEDETEEAMDSMDRTRCEGVLDALTDIYNLTYQLSFAIGEK*
Ga0157208_100026658F038241AGGMLGYTKEDIDHMSNSIHDAKLFYITKSDVVYVDKDPIVDGLLKAQDFLQGLWAEGYFD*
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