NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0153962_1005210

Scaffold Ga0153962_1005210


Overview

Basic Information
Taxon OID3300012674 Open in IMG/M
Scaffold IDGa0153962_1005210 Open in IMG/M
Source Dataset NameAttine ant fungus gardens microbial communities from Florida, USA - TSFL046 MetaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2951
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (100.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Basidiomycota → Agaricomycotina → Agaricomycetes → Agaricomycetidae → Agaricales → Marasmiineae(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Fungi → Mycelium → Unclassified → Unclassified → Attine Ant Fungus Gardens → Attine Ant Fungus Gardens Microbial Communities From Various Locations In Usa

Source Dataset Sampling Location
Location NameUSA: Florida, Withalacochee
CoordinatesLat. (o)28.571Long. (o)-82.2546Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000591Metagenome1003Y
F063226Metagenome129Y

Sequences

Protein IDFamilyRBSSequence
Ga0153962_10052103F063226GGAMICSELLTSSVSEFPSLLGLEFPLRESFGGFLESKIEHLGKTRNLVTQR*
Ga0153962_10052105F000591AGGVLSSCSGVEMEVSPYIHPPFKIATSRSNGLRMKNVVELRASDVSRSSRVFAMELHCEFWCRNFRSRLPGIVFAAVSLLLNKVLKSSPMSTTVEYFLYFPLCFSIDDYGRWMVLHFVSCNQVVQSQSELYYVEYWMELLHPVWQP*

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