Scaffold Ga0153962_1037374

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0153962_1037374

Scaffold Ga0153962_1037374

Overview

Basic Information
Taxon OID	3300012674 Open in IMG/M
Scaffold ID	Ga0153962_1037374 Open in IMG/M
Source Dataset Name	Attine ant fungus gardens microbial communities from Florida, USA - TSFL046 MetaG
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	816
Total Scaffold Genes	2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	1 (50.00%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Associated Families	1

Taxonomy
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Basidiomycota → Agaricomycotina → Agaricomycetes → Agaricomycetidae → Agaricales → Strophariaceae → Galerina → Galerina marginata → Galerina marginata CBS 339.88	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Fungi → Mycelium → Unclassified → Unclassified → Attine Ant Fungus Gardens → Attine Ant Fungus Gardens Microbial Communities From Various Locations In Usa

Source Dataset Sampling Location
Location Name	USA: Florida, Withalacochee
Coordinates	Lat. (^o)	28.571	Long. (^o)	-82.2546	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F000591	Metagenome	1003	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0153962_10373741	F000591	GGA	MKNVVEFRMVDVSWSPRVFAMELRCEFWSGDFGGGLPGIVFTVISFPLDEVLESSPVPMTVEYLFYFPLCFSVDDYGWWVVLCLPVCNRVVWGGSKLHYVEHWVELLHPV*

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