NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0153928_1077000

Scaffold Ga0153928_1077000


Overview

Basic Information
Taxon OID3300012677 Open in IMG/M
Scaffold IDGa0153928_1077000 Open in IMG/M
Source Dataset NameAttine ant fungus gardens microbial communities from New Jersey, USA - TSNJ012 MetaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)639
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Fungi → Mycelium → Unclassified → Unclassified → Attine Ant Fungus Gardens → Attine Ant Fungus Gardens Microbial Communities From Various Locations In Usa

Source Dataset Sampling Location
Location NameUSA: New Jersey, Wharton State Forest
CoordinatesLat. (o)39.7096Long. (o)-74.6638Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F004042Metagenome / Metatranscriptome456Y
F010654Metagenome / Metatranscriptome301Y
F015246Metagenome / Metatranscriptome256Y

Sequences

Protein IDFamilyRBSSequence
Ga0153928_10770001F015246N/ALTWLHSQDDRIAGVTQHGSGGDVLLAGITTYAGVRPGMHVWVGVDWDVAHSTGATFMPVRRHISFGITQQFRFHVLGK*
Ga0153928_10770002F004042AGGAGGMDMRKLALLVLLGSTLAPASLAQIKHVEMRVEGMT*
Ga0153928_10770003F010654GAGVKEHLGRQSGVQNVEVSLIDGKVEITPKEDGQIDPAQLLKATYESGVTAAEMDMTARGKIVKDSSGSFALQVEPNRSFAFASNGLSK
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