NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0136613_10105915

Scaffold Ga0136613_10105915


Overview

Basic Information
Taxon OID3300012681 Open in IMG/M
Scaffold IDGa0136613_10105915 Open in IMG/M
Source Dataset NamePolar desert sand microbial communities from Dry Valleys, Antarctica - metaG UQ272 (21.06)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1609
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Ice → Unclassified → Polar Desert Sand → Polar Desert Microbial Communities From Antarctic Dry Valleys

Source Dataset Sampling Location
Location NameAntarctica: Dry Valley
CoordinatesLat. (o)-78.049Long. (o)163.698Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F090809Metagenome108N

Sequences

Protein IDFamilyRBSSequence
Ga0136613_101059152F090809N/AHDPIAYALKIQEFAKEIDFWLQTVEHYSQMYDKAVKQVTSLGGILTTIDKQLARNKSLVSSIASIGQTVRQIYMLKRQIENMVQCRIRAVRSLDSRLKAGIFNPQQDLQDLEEYLRNSIGRASQDTIANIERLANMDNEFERLRYELQNAYGRLAEAQAVLKQFEDMLTTEMAKPEDERHSLGIIQTQISNTKIQIEQIKTQINDLTEKLAAKTKQYGIQLETRADYGQQVHQTNKAWESTVPVRKDILDEIDKTFEKDEGIDDDPADGNN*
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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