Scaffold Ga0136613_10200673

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0136613_10200673

Scaffold Ga0136613_10200673

Overview

Basic Information
Taxon OID	3300012681 Open in IMG/M
Scaffold ID	Ga0136613_10200673 Open in IMG/M
Source Dataset Name	Polar desert sand microbial communities from Dry Valleys, Antarctica - metaG UQ272 (21.06)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	1126
Total Scaffold Genes	3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	2 (66.67%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Associated Families	1

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Rubrobacterales → Rubrobacteraceae → unclassified Rubrobacteraceae → Rubrobacteraceae bacterium	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Ice → Unclassified → Polar Desert Sand → Polar Desert Microbial Communities From Antarctic Dry Valleys

Source Dataset Sampling Location
Location Name	Antarctica: Dry Valley
Coordinates	Lat. (^o)	-78.049	Long. (^o)	163.698	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F020164	Metagenome	225	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0136613_102006732	F020164	GGAGG	MAGYLPKEWNGKRVAVRFGSGRGFDARLVDNNAGGITVEAIKEEDAEEEHTRSAFVPWAAVRYIQLLEEPGEPRKPRPKGTAAEMPENPAP*

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