NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0137398_10001670

Scaffold Ga0137398_10001670


Overview

Basic Information
Taxon OID3300012683 Open in IMG/M
Scaffold IDGa0137398_10001670 Open in IMG/M
Source Dataset NameVadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czorhiz2.16 metaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)9163
Total Scaffold Genes13 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)8 (61.54%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil → Vadose Zone Soil And Rhizosphere Microbial Communities From The Eel River Critical Zone Observatory, Northern California To Study Diel Carbon Cycling

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)39.7291Long. (o)-123.6419Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F015193Metagenome / Metatranscriptome256Y
F021951Metagenome / Metatranscriptome216Y
F022302Metagenome / Metatranscriptome215Y
F059826Metagenome133Y

Sequences

Protein IDFamilyRBSSequence
Ga0137398_1000167011F015193AGGAGMESYKMFMCPNCEGHFRVIWPDPLPNHYHLCSKIKIKCPDCHDVTEPYDFLIDRIMQPTDPSIPTVEVLSISPRDPNPDPNARSNYWHQVWSCREARYRATYRPVK*
Ga0137398_1000167012F021951N/AMEPITTVTTAWTIAKTAGEISKKLYEFGKGLKDREAKQQIDEILDGVRELKQSASQLEDENRDLREKLRFKSDGYEFRTPFWYDKVHPDQPLCPKCFSNKIAAPMGEPGQGCSDDYRLCLTCNVCIEVSRHTAMRPSNLGLRY*
Ga0137398_100016708F059826N/AMAAVLFSGVIGAANEKPPVVQDVIHATPEKIKKAALAMLVPDDYTVAYYTASQLKISRQWSSEETIRFNTDHWTNAPVSNCQHVLTLILLPVDLAQAISVTMHRDTVCHADGGWKIWTGDSEKDVQWMRTTLAKLKAKIEGADQRH*
Ga0137398_100016709F022302GAGMRVVAGCLLVAVGSVVLTQSSQNLHNQYGEPDRERFAARPGISLTVEYGSDHLACQALIEPPQPLTYKEEHVPLMSSEGVSEVLEEVAPVAMRGKEISAGSLQTGCNVASLSEYENVTIMRSTHNCLPLKPEREIRTTIGFNRDACPKQTKQP*
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