NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0137398_10002228

Scaffold Ga0137398_10002228


Overview

Basic Information
Taxon OID3300012683 Open in IMG/M
Scaffold IDGa0137398_10002228 Open in IMG/M
Source Dataset NameVadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czorhiz2.16 metaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)8228
Total Scaffold Genes9 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)8 (88.89%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil → Vadose Zone Soil And Rhizosphere Microbial Communities From The Eel River Critical Zone Observatory, Northern California To Study Diel Carbon Cycling

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)39.7291Long. (o)-123.6419Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001920Metagenome / Metatranscriptome617Y
F018804Metagenome / Metatranscriptome233Y

Sequences

Protein IDFamilyRBSSequence
Ga0137398_100022285F001920GGAGMFDSRSSETMVLNWRGPLLAAGIFATVFAILLLMAHQNQSNTSDMGSSLREDPYGTSLLFDSYGRAGYQVKRSQDEDSLSDQNASKTTAFFIGGYPSDDWNRENRKLRTEGKFRGRLEDFLARGGRIVLIEHAWELKSQSQGWEIENKWKQTPHESKPKWISPDLRAMPTASEMMYLAADAPWLKTDAHWTTLYAGSGEANAKADTSLHVYMAMRRVGKGELVAASQESFLLNEAIKTHPNPVLLDFLAGGRPVIWVDETLHGLHQDQGVLWLVQRYRLQAALMLFWATLLVLLWSMSGDLVRRPTRDRNAQIIRHGEGAGVAARRLLQRSIASEQVVAECWEQFRRRSPQDAQAISADAHSRPRLRAALAQPPLAGYKELRQLIAERRASAKDLAHGDRGAPDSSTASPKTIPEETRIT
Ga0137398_100022289F018804N/AAEAGKAEWRHRDVLYDSIAVTIGWGWILFWPVFVAAFPAAIFLHVKYRKAPRSYLIPRHGWRFWVAYAGLLWLPLLLAASFFARLMEGRH*
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