NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0136614_10329049

Scaffold Ga0136614_10329049


Overview

Basic Information
Taxon OID3300012684 Open in IMG/M
Scaffold IDGa0136614_10329049 Open in IMG/M
Source Dataset NamePolar desert sand microbial communities from Dry Valleys, Antarctica - metaG UQ279 (21.06)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1129
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Ice → Unclassified → Polar Desert Sand → Polar Desert Microbial Communities From Antarctic Dry Valleys

Source Dataset Sampling Location
Location NameAntarctica: Dry Valley
CoordinatesLat. (o)-78.0526Long. (o)163.748Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F005142Metagenome410Y
F055429Metagenome138Y

Sequences

Protein IDFamilyRBSSequence
Ga0136614_103290493F005142AGGAGLTIEILEAAMTKPDVNGTPALPKRNGPKGLLPGTWAERTLRVAYVDCHGAGRETTGTLLDVYPFGPVLNLSGEKTALSWDALKSVTLTND*
Ga0136614_103290494F055429N/AVQAEGLPAAEGKSMTLQRLVLDYRTGELVLRVLYRRQDGPNPGTKARAREVSGLVREGLREALRALEGDVEVVGTSGFTTREDVLLATASPAVDKQAKAKLKGA*

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