Basic Information | |
---|---|
Taxon OID | 3300012685 Open in IMG/M |
Scaffold ID | Ga0137397_10000003 Open in IMG/M |
Source Dataset Name | Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czorhiz1.16 metaG |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
---|---|
Scaffold Length (bps) | 142602 |
Total Scaffold Genes | 117 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 61 (52.14%) |
Novel Protein Genes | 4 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 3 (75.00%) |
Associated Families | 4 |
Taxonomy | |
---|---|
All Organisms → cellular organisms → Bacteria | (Source: IMG/M) |
Source Dataset Ecosystem |
---|
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil → Vadose Zone Soil And Rhizosphere Microbial Communities From The Eel River Critical Zone Observatory, Northern California To Study Diel Carbon Cycling |
Source Dataset Sampling Location | ||||||||
---|---|---|---|---|---|---|---|---|
Location Name | USA: California | |||||||
Coordinates | Lat. (o) | 39.7291 | Long. (o) | -123.6419 | Alt. (m) | Depth (m) | Location on Map | |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
---|---|---|---|
F001231 | Metagenome / Metatranscriptome | 741 | Y |
F006137 | Metagenome / Metatranscriptome | 380 | Y |
F008484 | Metagenome / Metatranscriptome | 332 | Y |
F010988 | Metagenome / Metatranscriptome | 296 | Y |
Protein ID | Family | RBS | Sequence |
---|---|---|---|
Ga0137397_1000000390 | F010988 | AGGAG | MNRREFLSALGGASALSAVTMINPSAAFAEADVTSQTTSLYVKGLVMLDLGNPESVRLGFPKAPGHKATLSIVPQNGSKRFLTIKGNGSVDAPSAATADPRIFVPELVRMKEFYGSGVKSHVDQCPSVITIPSTAIKSVTTSEVSKARYTFVRADNGDEVETFRPRQIADVIKIDLKSDCTLKLDNGKVNIPLETARELRVEYTPEKVDSLDPFADHFHHYFDYVERPAALDFDVVPKNLSGTSAPTPRVGHHFMMLDNIVFCYLIAVP* |
Ga0137397_1000000392 | F006137 | AGGA | MPDSVRRFTRRNDGETSAAELLRECGEKLTDRALWTRFQERFQGLIFLYLLRALRFRSIQEDTADIVPDLAQEVYMRLVQNDGRILRSFRGSTEFSVMAFLSRISATVVQDHLRQLGSSKRRGQLISIDWTNVAEFNEKNSPLSSEFDPGTLSAILSWIDVKRVVEGDPDRKNARRNALIFKLHYVDGFSSGEIAHFPGFELTKSGVETILARLRKRIQE* |
Ga0137397_1000000397 | F008484 | N/A | MQTFTEPEFNLIRKLHGEHPQTVLQIKEPCPTHSVCNPLPLFRVYKIDDASFEAQWNGYHEAGVKQVFRFEEAV* |
Ga0137397_1000000398 | F001231 | AGGAGG | MVELRFRIRNNVFNAQATVRRATIRPLALCVPSVEEAALIGEVDETGRVIPRRGVFFLTNLRTGPVIEGFEDCALGEFVKAQLEALSQNGEPPAKCEVHGLDPFLELAEPEQTERLRDLISVCEFRSNEFTPESAVRFLKESGFFDEYIIVGVKRGTGWRRSRCITTFEGRPADAATILGHLAEYFGKEQQDDKPHDDRHM* |
⦗Top⦘ |