NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0137397_10066783

Scaffold Ga0137397_10066783


Overview

Basic Information
Taxon OID3300012685 Open in IMG/M
Scaffold IDGa0137397_10066783 Open in IMG/M
Source Dataset NameVadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czorhiz1.16 metaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2600
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (60.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil → Vadose Zone Soil And Rhizosphere Microbial Communities From The Eel River Critical Zone Observatory, Northern California To Study Diel Carbon Cycling

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)39.7291Long. (o)-123.6419Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000986Metagenome / Metatranscriptome813Y
F008754Metagenome / Metatranscriptome328Y

Sequences

Protein IDFamilyRBSSequence
Ga0137397_100667834F000986GGAGGMMLLAKAALGLTGTLFVAGAYTFHEGVIRIDVDEHRAGGSHVHMWVPAAAVPMALHFVPQKHLRKAAEHSREALPIAHAIVKELKKYPDVDLVEVVDGSQHVRIRTRNGKLQIDVEEPDQQVHLLLPLSTLDEVTSQLEAKAPGA*
Ga0137397_100667835F008754N/AVPMKVIDALFSAGKDELDLVAALHALSGTGDTELVSVKADDNTVRVWLDSKNVAN*
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Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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