NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0157543_1184131

Scaffold Ga0157543_1184131


Overview

Basic Information
Taxon OID3300012687 Open in IMG/M
Scaffold IDGa0157543_1184131 Open in IMG/M
Source Dataset NameOligotrophic lake water microbial communities from Sparkling Lake, Wisconsin, USA - GEODES032 metaT (Metagenome Metatranscriptome)
Source Dataset CategoryMetatranscriptome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)16119
Total Scaffold Genes26 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)22 (84.62%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Oligotrophic, Dystrophic, And Eutrophic Lakes In Wisonsin, Usa

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)46.008Long. (o)-89.701Alt. (m)Depth (m)4
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F095355Metagenome / Metatranscriptome105N
F097186Metagenome / Metatranscriptome104N

Sequences

Protein IDFamilyRBSSequence
Ga0157543_118413117F095355AGGAMDKRIGTADNYAISDEVAASQLRYRYEKTPEYLEWLEAVAAWRRCGMDGPQPPAPDLTQGLQEYRDGVPTRRVSVDLWREDTRGLDLRDVPSSAYRATARDRWRLLGAVLPGRDQVAVGPEDLASTMVRFALMDLNLRRPGDGGDAYHDMVAELYRLALDAAREMVDYLMTADIESALGRREDDA*
Ga0157543_118413123F097186GGGGGMSIVVGEKEPRGFDWVAMGLGILLGVTGTVIVGAQNGEQVGRSIESATRSCVAELGVRNGDSAAACYDMQADALNRIELQRQALDRLADRCVLSVPDTERLRVTRTRDVKRFKVETPAPSSTAGSADWESEDFGPDGDPDGAP*
 ⦗Top⦘



Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.