NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0157541_1172729

Scaffold Ga0157541_1172729


Overview

Basic Information
Taxon OID3300012688 Open in IMG/M
Scaffold IDGa0157541_1172729 Open in IMG/M
Source Dataset NameOligotrophic lake water microbial communities from Sparkling Lake, Wisconsin, USA - GEODES030 metaT (Metagenome Metatranscriptome)
Source Dataset CategoryMetatranscriptome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)729
Total Scaffold Genes1 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Oligotrophic, Dystrophic, And Eutrophic Lakes In Wisonsin, Usa

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)46.008Long. (o)-89.701Alt. (m)Depth (m)4
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F016926Metagenome / Metatranscriptome243Y

Sequences

Protein IDFamilyRBSSequence
Ga0157541_11727291F016926N/AVNYGNNERRDYSAKLLRDGIQTSLWTAETGNANYWALPQGSVWQCKGDNNGPYGILAGAREFAKCVSGVSDWTDFFNKLGSPTVTTDFDDWRAICDCWGDTTDDPLFNSPNKRHFADCFLDAVGGCGDGSATAKARLDAQERAFLTVVLRTIGQAGDTQAVLTQRQTLLINLLASQQQFDTVGVHCRFIEPACV
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