NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0157573_1004595

Scaffold Ga0157573_1004595


Overview

Basic Information
Taxon OID3300012693 Open in IMG/M
Scaffold IDGa0157573_1004595 Open in IMG/M
Source Dataset NameDystrophic lake water microbial communities from Trout Bog Lake, Wisconsin, USA - GEODES075 metaT (Metagenome Metatranscriptome)
Source Dataset CategoryMetatranscriptome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1544
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (25.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Oligotrophic, Dystrophic, And Eutrophic Lakes In Wisonsin, Usa

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)46.041Long. (o)-89.686Alt. (m)Depth (m)1
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F008745Metagenome / Metatranscriptome328N
F040465Metagenome / Metatranscriptome161N

Sequences

Protein IDFamilyRBSSequence
Ga0157573_10045952F040465N/AMSDKEVDEYPQWPDITEEELSFAENLWNRDSSPDEQRLDDWLRVMEEIVATIGYTYHSSFQLLKSNNLKNESLLEALRGMYIFAMAEVNVAKRKTTLS*
Ga0157573_10045953F008745GGAMSNGYQITEEERDTLVCPRLECMGAQELLDVWLLPLVLEVGSILEEAYRTSHQLFERGQGEERLLGYLQHQLMTAITELQVVQGWIASSCNMSSDKECRVLDGEEDKSEGKVLKEGSEANQSADQQADCGKQKSTSYYQWKLRHE*
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