Scaffold Ga0157573_1072381

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0157573_1072381

Scaffold Ga0157573_1072381

Overview

Basic Information
Taxon OID	3300012693 Open in IMG/M
Scaffold ID	Ga0157573_1072381 Open in IMG/M
Source Dataset Name	Dystrophic lake water microbial communities from Trout Bog Lake, Wisconsin, USA - GEODES075 metaT (Metagenome Metatranscriptome)
Source Dataset Category	Metatranscriptome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	875
Total Scaffold Genes	2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	1 (50.00%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (50.00%)
Associated Families	2

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Oligotrophic, Dystrophic, And Eutrophic Lakes In Wisonsin, Usa

Source Dataset Sampling Location
Location Name	USA: Wisconsin
Coordinates	Lat. (^o)	46.041	Long. (^o)	-89.686	Alt. (m)		Depth (m)	1
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F032254	Metagenome / Metatranscriptome	180	N
F042744	Metagenome / Metatranscriptome	157	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0157573_10723811	F042744	AGCAG	MESSQVSTAVVGPSVYKNVLGMIKQLRKMILKWISDRETCSPSLIQMFEGTKRWFREQVKIHFADSQKRYLQWRWRLAEKMFLQFREGQALTAAPALPTRGKAAKAADLHLVLQRQMGKAANASAKKRQ
Ga0157573_10723812	F032254	N/A	MCVRKVGYLVAEKRFVAIPLLPPSPPPDKDATSSKFVVEIQCSNRACRYHGHRRRQQVPLMIQSLAQCARSCGNFSCFYPGCRVIPVLDPSPQLFCVILQACGGASSSPRD*

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