NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0157559_1028123

Scaffold Ga0157559_1028123


Overview

Basic Information
Taxon OID3300012694 Open in IMG/M
Scaffold IDGa0157559_1028123 Open in IMG/M
Source Dataset NameDystrophic lake water microbial communities from Trout Bog Lake, Wisconsin, USA - GEODES054 metaT (Metagenome Metatranscriptome)
Source Dataset CategoryMetatranscriptome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1899
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Oligotrophic, Dystrophic, And Eutrophic Lakes In Wisonsin, Usa

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)46.041Long. (o)-89.686Alt. (m)Depth (m)1
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F008745Metagenome / Metatranscriptome328N
F040465Metagenome / Metatranscriptome161N

Sequences

Protein IDFamilyRBSSequence
Ga0157559_10281232F008745GGAMSNGYQITEEERDTLVCPRLECMGAQELLDVWLLPLVLEVGGILEEAYRTSHQLFERGQGEERILSLLQHQLMTAITELEVVQGWIASSCNMSSDKECRVLDGEEDKSEGKVLKEGSEANQSADQQADCGKQKSTSYYQWKLRHE*
Ga0157559_10281233F040465N/AMSDEEVDECAQWPEITEEELSFAENLWNRDSSPDEQRLDDWLRVMEEIVATIGYTYHSSFQLLKSNNLKNESLLEALRGMYIFAMAEVNVAKRKTTSS*
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