NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0157593_1085962

Scaffold Ga0157593_1085962


Overview

Basic Information
Taxon OID3300012699 Open in IMG/M
Scaffold IDGa0157593_1085962 Open in IMG/M
Source Dataset NameDystrophic lake water microbial communities from Trout Bog Lake, Wisconsin, USA - GEODES110 metaT (Metagenome Metatranscriptome)
Source Dataset CategoryMetatranscriptome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1074
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Oligotrophic, Dystrophic, And Eutrophic Lakes In Wisonsin, Usa

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)46.041Long. (o)-89.686Alt. (m)Depth (m)1
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F019779Metagenome / Metatranscriptome227N
F039102Metagenome / Metatranscriptome164N

Sequences

Protein IDFamilyRBSSequence
Ga0157593_10859621F019779N/AECSGERCFTPPEDDWEIISRGSDFIIHGLETLDEQLDIITTRIDTENKTEEILKNIRKGFSIIDDIILYATTFINEANKAKVEKFRGFISDLLDFAKTNITKTLVIVRKLRARSLLSLIPLTKDLIMEQKHVKKLVSSSNLEQVKELLKEYRCTIRRRISRRYSI*
Ga0157593_10859622F039102N/AMNKDQEKERLIRNLFKAIDNLDSTESKETISQAATRIYHLKKEIVKIDPTWRVRDPYNYYVHRILSLLDGIDTRENPNVHNNQELYLKLFHETRMIRKINQSWRLNVPKLVEFMTETSKVTHSDKVEPIETEEVPKPSSIKWK*
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