NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0157572_1160316

Scaffold Ga0157572_1160316


Overview

Basic Information
Taxon OID3300012703 Open in IMG/M
Scaffold IDGa0157572_1160316 Open in IMG/M
Source Dataset NameDystrophic lake water microbial communities from Trout Bog Lake, Wisconsin, USA- GEODES074 metaT (Metagenome Metatranscriptome)
Source Dataset CategoryMetatranscriptome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)813
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Oligotrophic, Dystrophic, And Eutrophic Lakes In Wisonsin, Usa

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)46.041Long. (o)-89.686Alt. (m)Depth (m)1
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F046332Metagenome / Metatranscriptome151N
F066725Metagenome / Metatranscriptome126N

Sequences

Protein IDFamilyRBSSequence
Ga0157572_11603161F066725N/AMCTRGVTWFTNPEGGEFTPAQLWDLREDLTKHLIIVLGRLTVEIGSRFESPATLPHYMHLMHDTILKLKSIDSNWHLVYSAEKENCLRIMQHDCRCGFKNRRRKQ
Ga0157572_11603162F046332N/AMNQSAQVRCSGHNRYTSMVSQGPLINGWCHERDQLVRRLIKLVNDVFVDDQYPGNNLVWVKPMREIADAIVTLDPSWRLECVTERYKCMVIKHPNCSCDRPITRANH*
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